PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Solyc04g056550.1.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 183aa MW: 20838.7 Da PI: 5.1435 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 51.3 | 1.5e-16 | 16 | 63 | 2 | 49 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 +ienk +tfskRr+g++KKA+E+ + Cd+++ ++++s++gk + + Solyc04g056550.1.1 16 KIENKNALLTTFSKRRKGLFKKASEVVTECDVDIGIMMISPSGKPHSF 63 79*****************************************98876 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 2.0E-24 | 7 | 66 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 20.619 | 7 | 67 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 3.79E-22 | 8 | 77 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.1E-11 | 9 | 29 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.3E-20 | 16 | 63 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.1E-11 | 29 | 44 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.1E-11 | 44 | 65 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 183 aa Download sequence Send to blast |
MERKKTKGRQ KIPMQKIENK NALLTTFSKR RKGLFKKASE VVTECDVDIG IMMISPSGKP 60 HSFFHPTADA IVSRFQNPDM QLSEGIRLDA TTARNRVNQL KTRLEELDAI EDALFAQTIF 120 YDQMAETQQK SSWESIEQLD ADELIINEAW LRDTNFKICD RLSQLEIGAS SSLGCEFLEY 180 EV* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Solyc04g056550.1.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | CT990559 | 0.0 | S.lycopersicum DNA sequence from clone LE_HBa-78E4 on chromosome 4, complete sequence |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004237586.3 | 1e-134 | agamous-like MADS-box protein AGL29 | ||||
TrEMBL | M1DVS1 | 1e-102 | M1DVS1_SOLTU; Uncharacterized protein | ||||
STRING | Solyc04g056550.1.1 | 1e-133 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA382 | 20 | 138 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G04100.1 | 5e-23 | AGAMOUS-like 57 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Solyc04g056550.1.1 |
Publications ? help Back to Top | |||
---|---|---|---|
|