PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

ERF

Protein Properties

Length: 279aa MW: 31052.5 Da PI: 5.4269

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc04g054910.2.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	67	3.5e-21	76	126	2	56
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+GVr+++ +g+WvAeIr p++ r+r +lg+f+taeeAa a+++a+ kl+ge Solyc04g054910.2.1 76 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEEAALAYDKAAYKLRGE 126 59****9.******965...5************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	1.86E-34	75	135	No hit	No description
SuperFamily	SSF54171	1.05E-23	76	134	IPR016177	DNA-binding domain
Gene3D	G3DSA:3.30.730.10	1.7E-32	76	134	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	23.235	76	133	IPR001471	AP2/ERF domain
SMART	SM00380	5.8E-38	76	139	IPR001471	AP2/ERF domain
Pfam	PF00847	1.2E-14	77	126	IPR001471	AP2/ERF domain
PRINTS	PR00367	2.3E-11	77	88	IPR001471	AP2/ERF domain
PRINTS	PR00367	2.3E-11	99	115	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 279 aa Download sequence Send to blast
MAAAIDVYSS SSNLSDPLTE ELMKALEPFM KGILQIQAQI QFQNQQQQLQ LLHQQQQSLV 60 PMKQTGATSS QKATKLYRGV RQRHWGKWVA EIRLPKNRTR LWLGTFDTAE EAALAYDKAA 120 YKLRGEFARL NFPHLRHQLN NEFSDFKPLH SSVDAKLQAI CQSLANPKSD DSCSKSNSKP 180 RKSKTAAVSV DSNSAQESSS KSEITTDDSL KEEFSYPENG TIKIEASSSS SPPTPSEESS 240 SSSESDITFL DFAEPSFDES ENFFLPKYPS VEIDWAAL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gcc_A	5e-22	75	133	1	60	ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Les.11769	0.0	callus\| cell culture\| flower\| fruit\| leaf\| root\| stem

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc04g054910.2.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC209507	5e-71	Solanum lycopersicum chromosome 6 clone C06HBa0021K07, complete sequence

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004237407.1	1e-144	ethylene-responsive transcription factor RAP2-4
Swissprot	O65665	3e-67	ERF60_ARATH; Ethylene-responsive transcription factor ERF060
TrEMBL	A0A3Q7G2F2	1e-143	A0A3Q7G2F2_SOLLC; Uncharacterized protein
STRING	Solyc04g054910.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1610	24	71
Representative plant	OGRP6	16	1718

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G39780.1	1e-46	ERF family protein

Link Out ? help Back to Top
Phytozome	Solyc04g054910.2.1

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]