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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Solyc04g054320.2.1 |
| Common Name | NITF |
| Organism |
|
| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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| Family |
bZIP |
| Protein Properties |
Length: 371aa MW: 41763.5 Da PI: 5.1939 |
| Description |
bZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Solyc04g054320.2.1 | genome | ITAG | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | bZIP_1 | 30.4 | 8.8e-10 | 85 | 121 | 4 | 39 |
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHH.HHHHHH CS
bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLee.kvkeLe 39
+k+ rr+++NReAAr+sR+RKka++++Le+ k k L+
Solyc04g054320.2.1 85 DKVRRRLAQNREAARKSRLRKKAYVQQLENsKLKLLQ 121
799**************************82444444 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 371 aa
Download sequence Send
to blast |
MNSSTYTQFV ASKRMGICDP IHQIGMWGDF KGSSFPDSLI LEVENCLENE MPIMEKRLEN 60
EIEEPSQVTV GTSNRYEPET TKRIDKVRRR LAQNREAARK SRLRKKAYVQ QLENSKLKLL 120
QLEQELERNR QQGLYVGDGL DASQIGCSGT ANSGIASFEM EYGHWVEEQD RQTDDLRNAL 180
NSQMGEIELR ILVEDCLNHY FDLFRLKATA ANADVLYLMS GTWKTSAERF FLWIGGFRPS 240
ELLKVLTPHV EPLSDQQIQE VSNLTQSCQQ AEDALSQGMV KLHQILAEAV AAGTLGEGVI 300
LPQMTATIEK LEALVRFVNQ ADHLRQETLL QMSCILAPHQ SAQGLLALGD YFKRLRALSS 360
LWAGRLSEPA *
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AF387785 | 0.0 | Lycopersicon esculentum leucine-zipper transcription factor (NITF) mRNA, complete cds |
| Publications
? help Back to Top |
- Klinedinst S,Pascuzzi P,Redman J,Desai M,Arias J
A xenobiotic-stress-activated transcription factor and its cognate target genes are preferentially expressed in root tip meristems.
Plant Mol. Biol., 2000. 42(5): p. 679-88
[PMID:10809441] - Johnson C,Boden E,Desai M,Pascuzzi P,Arias J
In vivo target promoter-binding activities of a xenobiotic stress-activated TGA factor.
Plant J., 2001. 28(2): p. 237-43
[PMID:11722767] - Katagiri F,Seipel K,Chua NH
Identification of a novel dimer stabilization region in a plant bZIP transcription activator.
Mol. Cell. Biol., 1992. 12(11): p. 4809-16
[PMID:1406663] - Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
Theor. Appl. Genet., 2005. 112(1): p. 72-84
[PMID:16208505] - Miao ZH,Lam E
Construction of a trans-dominant inhibitor for members of the TGA family of transcription factors conserved in higher plants.
Plant J., 1995. 7(6): p. 887-96
[PMID:7599649] - Pascuzzi P,Hamilton D,Bodily K,Arias J
Auxin-induced stress potentiates trans-activation by a conserved plant basic/leucine-zipper factor.
J. Biol. Chem., 1998. 273(41): p. 26631-7
[PMID:9756903]
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