PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

WRKY

Protein Properties

Length: 235aa MW: 27138.4 Da PI: 8.7067

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc04g051540.2.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	102.4	2.6e-32	157	215	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vk++++prsYYrCt+ +C+vkk+ver aedp++v++tYeg+H h+ Solyc04g051540.2.1 157 LDDGYKWRKYGQKVVKNTQHPRSYYRCTQDNCRVKKRVERLAEDPRMVITTYEGRHVHS 215 59********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.6E-33	142	215	IPR003657	WRKY domain
SuperFamily	SSF118290	1.06E-28	149	216	IPR003657	WRKY domain
PROSITE profile	PS50811	29.356	152	217	IPR003657	WRKY domain
SMART	SM00774	9.8E-37	157	216	IPR003657	WRKY domain
Pfam	PF03106	3.6E-25	158	214	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:1901141	Biological Process	regulation of lignin biosynthetic process
GO:1904369	Biological Process	positive regulation of sclerenchyma cell differentiation
GO:0001046	Molecular Function	core promoter sequence-specific DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 235 aa Download sequence Send to blast
MFSQSLFEDH QDMSTQLGFF SFPPNCNNMG ISSTASSTLP FIGYNQNTLK TLTMIPPSFD 60 HNSLNIESTH DPRHKEDLTT SIFEGSYLLS LQKSNTNTWA CGEVNERSNI IKRSKEFDLD 120 HHNLGVSSIK MKKIKSSRRK VREPRFCFKT MSDVDVLDDG YKWRKYGQKV VKNTQHPRSY 180 YRCTQDNCRV KKRVERLAED PRMVITTYEG RHVHSPSQDE EDSQASSQLN NLLW*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	4e-27	148	214	8	74	Probable WRKY transcription factor 4
2lex_A	4e-27	148	214	8	74	Probable WRKY transcription factor 4
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc04g051540.2.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC246544	3e-07	Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-67c1 map 1, complete sequence

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004237476.1	1e-177	probable WRKY transcription factor 13
TrEMBL	A0A3Q7G4B3	1e-176	A0A3Q7G4B3_SOLLC; Uncharacterized protein
STRING	Solyc04g051540.2.1	1e-177	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA10376	21	26
Representative plant	OGRP14	17	875

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G39410.1	1e-48	WRKY DNA-binding protein 13

Link Out ? help Back to Top
Phytozome	Solyc04g051540.2.1
Entrez Gene	101261017

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]