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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc04g050010.1.1 | ||||||||
Common Name | LOC101248668 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | LBD | ||||||||
Protein Properties | Length: 166aa MW: 18812.5 Da PI: 5.5755 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 136.6 | 9.2e-43 | 13 | 112 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 +CaaCk+lrr+C+++Cvlapyfp ++p kf ++h++FGasn++k+l++lpe++reda++s+vyeA+ar+rdPvyG++++i +lq+q+++l+ Solyc04g050010.1.1 13 PCAACKILRRRCVEKCVLAPYFPPTHPLKFTIAHRVFGASNIIKMLQELPEDQREDAVNSMVYEANARIRDPVYGCAAIICQLQKQISELQ 103 7****************************************************************************************** PP DUF260 92 aelallkee 100 a+l++++ e Solyc04g050010.1.1 104 ADLVKAQVE 112 ***999865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.86 | 12 | 113 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 8.3E-43 | 13 | 110 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 166 aa Download sequence Send to blast |
MEDTSEYSCP HHPCAACKIL RRRCVEKCVL APYFPPTHPL KFTIAHRVFG ASNIIKMLQE 60 LPEDQREDAV NSMVYEANAR IRDPVYGCAA IICQLQKQIS ELQADLVKAQ VEIMNVQIQN 120 TNLVALICTE MTQNQENNDH QQAYGNSNTC LEDNNLYAPW KSLWT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 4e-41 | 13 | 115 | 11 | 113 | LOB family transfactor Ramosa2.1 |
5ly0_B | 4e-41 | 13 | 115 | 11 | 113 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc04g050010.1.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004237662.1 | 1e-122 | LOB domain-containing protein 1-like | ||||
Swissprot | Q9LQR0 | 8e-67 | LBD1_ARATH; LOB domain-containing protein 1 | ||||
TrEMBL | A0A3Q7G4M5 | 1e-121 | A0A3Q7G4M5_SOLLC; Uncharacterized protein | ||||
STRING | Solyc04g050010.1.1 | 1e-121 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA43 | 24 | 669 | Representative plant | OGRP60 | 16 | 318 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07900.1 | 3e-69 | LOB domain-containing protein 1 |
Link Out ? help Back to Top | |
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Phytozome | Solyc04g050010.1.1 |
Entrez Gene | 101248668 |
Publications ? help Back to Top | |||
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