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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Solyc04g049800.2.1 |
| Common Name | LOC101252772 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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| Family |
AP2 |
| Protein Properties |
Length: 399aa MW: 44003.2 Da PI: 9.077 |
| Description |
AP2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Solyc04g049800.2.1 | genome | ITAG | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | AP2 | 53.8 | 4.6e-17 | 111 | 160 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g
Solyc04g049800.2.1 111 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 160
78*******************......55************************997 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 399 aa
Download sequence Send
to blast |
MLDLNNDSVF FKDDSVTSNT DSNSSSFQPS LSTLNFSILK SDRVFEIEDE SSTTGGGDML 60
TRQLFPVKGE IQGQSQCWLN LSVSESAGLE VPVYKPPVHK KSRRGPRSRS SQYRGVTFYR 120
RTGRWESHIW DCGKQVYLGG FDTAHAAARA YDRAAIKFRG VDADINFNIT DYNEDMKQMK 180
NLSKEEFVQV LRRHSNGFSR GNSKYRGVTL HKCGRWEGQF IGKKAYDKCD GREAVTNFVA 240
STYEREKKED KRDGGSGENL DLNLWISLPL EGGLKGGEIG RNVHFNFGGR DMVIGKTFET 300
QSSSIVPQGP ATMSKLSIFT GMYPGFPPHS TEGAMMKAEA ASSCPVLPNW GWKIHSQGVV 360
TPVPVFSSSA ASSGFSTATT LHTNSLLPPS NQLRLPTN*
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| Functional Description ? help
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| Source |
Description |
| UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}. |
