PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc04g025970.1.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 118aa MW: 13333.4 Da PI: 10.1618 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 29.7 | 8.1e-10 | 15 | 63 | 1 | 49 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 ++ie k r+ +f kRr + KKA+EL d+++ v i s+tgk y + Solyc04g025970.1.1 15 EKIEKKVARYASFFKRRLCLYKKASELIQERDVDIGVFISSQTGKPYSF 63 579******************************************9988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 14.563 | 7 | 67 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 3.0E-5 | 7 | 66 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00120 | 1.75E-14 | 8 | 65 | No hit | No description |
PRINTS | PR00404 | 1.5E-5 | 9 | 29 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 3.14E-15 | 10 | 83 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.3E-13 | 16 | 63 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.5E-5 | 29 | 44 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.5E-5 | 44 | 65 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 118 aa Download sequence Send to blast |
MEGKKKAGCQ RIPLEKIEKK VARYASFFKR RLCLYKKASE LIQERDVDIG VFISSQTGKP 60 YSFVHQTANV VINHFKSPTT IDLGAQFAGA EARNNVIQMN DMLNDFDARE KVTKNHI* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc04g025970.1.1 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CU927991 | 0.0 | S.lycopersicum DNA sequence from clone LE_HBa-27J19, complete sequence |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015162384.1 | 1e-45 | PREDICTED: agamous-like MADS-box protein AGL29 | ||||
TrEMBL | M1DQR0 | 1e-57 | M1DQR0_SOLTU; Uncharacterized protein | ||||
STRING | Solyc04g025970.1.1 | 4e-83 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA20843 | 3 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24840.1 | 7e-13 | AGAMOUS-like 61 |
Link Out ? help Back to Top | |
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Phytozome | Solyc04g025970.1.1 |
Publications ? help Back to Top | |||
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