PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc04g025970.1.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family M-type_MADS
Protein Properties Length: 118aa    MW: 13333.4 Da    PI: 10.1618
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc04g025970.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF29.78.1e-101563149
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                        ++ie k  r+ +f kRr  + KKA+EL    d+++ v i s+tgk y +
  Solyc04g025970.1.1 15 EKIEKKVARYASFFKRRLCLYKKASELIQERDVDIGVFISSQTGKPYSF 63
                        579******************************************9988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006614.563767IPR002100Transcription factor, MADS-box
SMARTSM004323.0E-5766IPR002100Transcription factor, MADS-box
CDDcd001201.75E-14865No hitNo description
PRINTSPR004041.5E-5929IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.14E-151083IPR002100Transcription factor, MADS-box
PfamPF003192.3E-131663IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-52944IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-54465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 118 aa     Download sequence    Send to blast
MEGKKKAGCQ RIPLEKIEKK VARYASFFKR RLCLYKKASE LIQERDVDIG VFISSQTGKP  60
YSFVHQTANV VINHFKSPTT IDLGAQFAGA EARNNVIQMN DMLNDFDARE KVTKNHI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc04g025970.1.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU9279910.0S.lycopersicum DNA sequence from clone LE_HBa-27J19, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015162384.11e-45PREDICTED: agamous-like MADS-box protein AGL29
TrEMBLM1DQR01e-57M1DQR0_SOLTU; Uncharacterized protein
STRINGSolyc04g025970.1.14e-83(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA2084333
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.17e-13AGAMOUS-like 61
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]