PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc04g025030.1.1
Common NameLOC101249345
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family M-type_MADS
Protein Properties Length: 136aa    MW: 15411 Da    PI: 10.372
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc04g025030.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF45.41.1e-141857443
                        -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
              SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                        +n +n qvtfs R++g++KK +EL+ L +ae+ +++fs+ 
  Solyc04g025030.1.1 18 KNARNLQVTFSTRLAGLFKKSNELCMLFNAEIFIVVFSQG 57
                        899**********************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006616.806759IPR002100Transcription factor, MADS-box
SMARTSM004321.1E-11767IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.31E-16892IPR002100Transcription factor, MADS-box
PRINTSPR004044.0E-8929IPR002100Transcription factor, MADS-box
PfamPF003191.1E-141759IPR002100Transcription factor, MADS-box
PRINTSPR004044.0E-82944IPR002100Transcription factor, MADS-box
PRINTSPR004044.0E-84465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 136 aa     Download sequence    Send to blast
MTTRINKGRQ RVDMVKMKNA RNLQVTFSTR LAGLFKKSNE LCMLFNAEIF IVVFSQGDKG  60
VLCFDHPSVN PLAEGFFEWN LPQPHINVHN QHIVARKEGG TRDLSTKLMS LEAILEKEKN  120
CGQILIEIRK RANSL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc04g025030.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004237284.14e-97agamous-like MADS-box protein AGL62
TrEMBLA0A3Q7G2Z79e-96A0A3Q7G2Z7_SOLLC; Uncharacterized protein
STRINGSolyc04g025030.1.12e-96(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA2749322
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.18e-27AGAMOUS-like 62
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]