PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

GATA

Protein Properties

Length: 338aa MW: 37004.5 Da PI: 6.6144

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc04g015360.2.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	54.5	1.6e-17	236	269	1	34
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 C +C tkTp+WR gp g+ktLCnaCG++y+k + Solyc04g015360.2.1 236 CLHCEITKTPQWRAGPMGPKTLCNACGVRYKKGR 269 99******************************87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PIRSF	PIRSF016992	3.7E-69	3	326	IPR016679	Transcription factor, GATA, plant
PROSITE profile	PS50114	11.49	230	266	IPR000679	Zinc finger, GATA-type
SMART	SM00401	3.8E-17	230	280	IPR000679	Zinc finger, GATA-type
Gene3D	G3DSA:3.30.50.10	8.2E-15	234	269	IPR013088	Zinc finger, NHR/GATA-type
SuperFamily	SSF57716	2.38E-15	234	293	No hit	No description
CDD	cd00202	1.19E-13	235	282	No hit	No description
PROSITE pattern	PS00344	0	236	261	IPR000679	Zinc finger, GATA-type
Pfam	PF00320	2.4E-15	236	270	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0030154	Biological Process	cell differentiation
GO:0045944	Biological Process	positive regulation of transcription from RNA polymerase II promoter
GO:0005634	Cellular Component	nucleus
GO:0005667	Cellular Component	transcription factor complex
GO:0000977	Molecular Function	RNA polymerase II regulatory region sequence-specific DNA binding
GO:0001085	Molecular Function	RNA polymerase II transcription factor binding
GO:0001228	Molecular Function	transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0003682	Molecular Function	chromatin binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 338 aa Download sequence Send to blast
MGSDFVDEID CSSFFDHMED LIEFSPENVC GGVDAVDCND FPSIWNDPLP DSDPFFSGSY 60 SNSASDFSAE LSVPLEDIVQ LEWLSTFVED SFSCGGLTLG KEHCSVKKES SDSKFLTSSP 120 VSVLESSSSS SSSSTSSSGP GKTLPPLSPC PRGPQRARTK RPRPTTFNPR SVNHLMFPTS 180 VSPQQFVAPG VNSLDSENFA ESPMKKKKKI KLSIPLAPIE TNQDNYQPAP QAVRKCLHCE 240 ITKTPQWRAG PMGPKTLCNA CGVRYKKGRL YPEYRPAASP TFVPSLHSNS HKKVLEMRSN 300 VFPEEETHYK QAKPRRARPL ITVQAENNTT ASTTPTE*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	159	163	KRPRP

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Les.10579	0.0	callus\| flower\| fruit\| leaf

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc04g015360.2.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004236632.1	0.0	GATA transcription factor 8
TrEMBL	A0A3Q7G1Q2	0.0	A0A3Q7G1Q2_SOLLC; GATA transcription factor
STRING	Solyc04g015360.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2345	23	58
Representative plant	OGRP68	17	287

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54810.2	8e-40	GATA family protein

Link Out ? help Back to Top
Phytozome	Solyc04g015360.2.1
Entrez Gene	101250294

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]