PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

ERF

Protein Properties

Length: 399aa MW: 44575 Da PI: 5.5268

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc04g012050.2.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	65.1	1.4e-20	156	205	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+W+AeIrdp+ + +r++lg+f+tae+Aa+a+++ ++k++g Solyc04g012050.2.1 156 RYRGVRQRP-WGKWAAEIRDPY----KaARVWLGTFDTAEDAARAYDETALKFRG 205 7******.******76....35**********************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.730.10	1.7E-32	156	214	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	25.001	156	213	IPR001471	AP2/ERF domain
Pfam	PF00847	1.8E-13	156	205	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.57E-22	156	214	IPR016177	DNA-binding domain
SMART	SM00380	1.3E-36	156	219	IPR001471	AP2/ERF domain
PRINTS	PR00367	6.2E-12	157	168	IPR001471	AP2/ERF domain
CDD	cd00018	3.13E-28	164	215	No hit	No description
PRINTS	PR00367	6.2E-12	179	195	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 399 aa Download sequence Send to blast
MCKFKVANYR KKGNYKAIIR DDEEEESGIN NNDNINVMFS GNINREEEMS MMVTALTRVI 60 TGEDRILNQE NNNNNIIGSS SLNEFSGGVG EKRGREEQQY FLSDIISSSK VGEDSSINRT 120 IASNTPTTEA TFIYTTPTYD HNNNTNIIDC DQPRRRYRGV RQRPWGKWAA EIRDPYKAAR 180 VWLGTFDTAE DAARAYDETA LKFRGSKAKL NFPENVRLLP TSSMEKGSLT NTFPSNSVES 240 NLEFLTKKKV LTSTFPAENN MVFSTERQFM TDTFPTEYVP VSSIISPNTS PNTLSTISFF 300 PNSNPIAHTQ LSNSNSDDIN TQYFLNGDFQ RGNSSLSLLN QSMFSTTFQY SSSSPSSSSS 360 SRVPFVPSMY FSGSQPTSQS SENDFRATSS DSAHHPPK*

Sequence ? help Back to Top

Protein Sequence Length: 399 aa Download sequence Send to blast

MCKFKVANYR KKGNYKAIIR DDEEEESGIN NNDNINVMFS GNINREEEMS MMVTALTRVI  60
TGEDRILNQE NNNNNIIGSS SLNEFSGGVG EKRGREEQQY FLSDIISSSK VGEDSSINRT  120
IASNTPTTEA TFIYTTPTYD HNNNTNIIDC DQPRRRYRGV RQRPWGKWAA EIRDPYKAAR  180
VWLGTFDTAE DAARAYDETA LKFRGSKAKL NFPENVRLLP TSSMEKGSLT NTFPSNSVES  240
NLEFLTKKKV LTSTFPAENN MVFSTERQFM TDTFPTEYVP VSSIISPNTS PNTLSTISFF  300
PNSNPIAHTQ LSNSNSDDIN TQYFLNGDFQ RGNSSLSLLN QSMFSTTFQY SSSSPSSSSS  360
SRVPFVPSMY FSGSQPTSQS SENDFRATSS DSAHHPPK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gcc_A	2e-25	155	216	1	63	ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc04g012050.2.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CU856251	0.0	S.lycopersicum DNA sequence from clone LE_HBa-70F1 on chromosome 4, complete sequence

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004237144.1	0.0	ethylene-responsive transcription factor ABR1-like
TrEMBL	A0A3Q7FZU1	0.0	A0A3Q7FZU1_SOLLC; Uncharacterized protein
STRING	Solyc04g012050.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA21	24	1165
Representative plant	OGRP6	16	1718

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64750.1	5e-32	ERF family protein

Link Out ? help Back to Top
Phytozome	Solyc04g012050.2.1
Entrez Gene	101263899

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]