PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc04g009950.2.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | MYB | ||||||||
Protein Properties | Length: 988aa MW: 111171 Da PI: 5.1199 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 43.1 | 9.9e-14 | 8 | 53 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 g W Ede+l+ av ++G+++W++I++ + ++++kqck rw+ +l Solyc04g009950.2.1 8 GVWKNTEDEILKAAVMKYGKNQWARISSLLV-RKSAKQCKARWYEWL 53 78*****************************.************986 PP | |||||||
2 | Myb_DNA-binding | 32.8 | 1.6e-10 | 60 | 103 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 WT eEde+l+++ k++++ W+tIa +g Rt+ qc +r+ k+l Solyc04g009950.2.1 60 TEWTREEDEKLLHLAKLMPTQ-WRTIAPIVG--RTPSQCLERYEKLL 103 68*****************99.********8..**********9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 22.008 | 2 | 57 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.7E-18 | 5 | 56 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.0E-15 | 6 | 55 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.24E-12 | 10 | 53 | No hit | No description |
Pfam | PF13921 | 4.7E-13 | 10 | 70 | No hit | No description |
SuperFamily | SSF46689 | 5.39E-21 | 33 | 109 | IPR009057 | Homeodomain-like |
CDD | cd11659 | 1.49E-30 | 55 | 106 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.4E-14 | 57 | 104 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.443 | 58 | 107 | IPR017930 | Myb domain |
SMART | SM00717 | 1.7E-12 | 58 | 105 | IPR001005 | SANT/Myb domain |
Pfam | PF11831 | 1.8E-57 | 406 | 648 | IPR021786 | Pre-mRNA splicing factor component Cdc5p/Cef1 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009870 | Biological Process | defense response signaling pathway, resistance gene-dependent | ||||
GO:0010204 | Biological Process | defense response signaling pathway, resistance gene-independent | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0009507 | Cellular Component | chloroplast | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 988 aa Download sequence Send to blast |
MRIMIKGGVW KNTEDEILKA AVMKYGKNQW ARISSLLVRK SAKQCKARWY EWLDPSIKKT 60 EWTREEDEKL LHLAKLMPTQ WRTIAPIVGR TPSQCLERYE KLLDAACTKD ENYDPNDDPR 120 KLKPGEIDPN PESKPARPDP VDMDEDEKEM LSEARARLAN TRGKKAKRKA REKQLEEARR 180 LASLQKRREL KAAGIDVRQR KRKRRGIDYN AEIPFEKKPP PGFYDVTEED RPVDQPKFPT 240 TIEELEGERR VDKEARLRKQ DIARNKIAER QDAPTSILHA NKLNDPEAVR KRSKLNLPAP 300 QIPDHELEAI AKIGIASDLI GGDELSEGNA ATRALLANYA QTPQHAMTPM RTPQRTPSTK 360 QDAIMMEAEN QRRLTQSQTP LLGGDNPLLH PSDFSGVTPK KREVQTPNPL LTPSATPGAT 420 SLTPRIGMTP SRDSYGMTPK GTPMRDELRI NEEMDMHSNA KLGQFNSKKE LLSGLKSLPQ 480 PKNEYQIVIQ QPPEENEEPE EKIEEDMSDR IAREKAEEEA KRQALLRKRS KVLQRELPRP 540 PIASLELIKS SLMRADEDKS SFVPPTLIEQ ADEMIRKELV SLLEHDNTKY PLDEKPEKEK 600 KKGVKRKIVA EPAIEDFEED ELKEADGLIK DEAHFLRVAM GHESESLDEF VEIHKATLND 660 IMYFPTRNAY GLSSVAGNME KLAALQNEFE NVKKKMDDDT KKATKLEQKI KVLTNGYQMR 720 AGKLWSQIES TFKKMDTAGT ELECFRALQK QEQLAASHRI NNMWEEVQKQ KELERTLQKR 780 YGDLIADTQK IQHLMDEYRI QDQMQEEVAA KNRALELAKA EMAEKDSVPS ADDVEPSGTG 840 QNSNTEENSA SASHVPIEAD VHVEPSGTNQ CSNAEENSAS IEADNVHVEP SGTSQCPIAE 900 ETSASISHDT TPRDVDGQVQ VADVSTMDSE AISDHVPMEG QQNPGEESNT VVTKTEDSTV 960 AAGDVDVTKT DDSGVVAGDG EADPKNM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5mqf_L | 0.0 | 2 | 792 | 3 | 799 | Cell division cycle 5-like protein |
5xjc_L | 0.0 | 2 | 792 | 3 | 799 | Cell division cycle 5-like protein |
5yzg_L | 0.0 | 2 | 792 | 3 | 799 | Cell division cycle 5-like protein |
5z56_L | 0.0 | 2 | 792 | 3 | 799 | Cell division cycle 5-like protein |
5z57_L | 0.0 | 2 | 792 | 3 | 799 | Cell division cycle 5-like protein |
5z58_L | 0.0 | 2 | 792 | 3 | 799 | Cell division cycle 5-like protein |
6ff4_L | 0.0 | 2 | 792 | 3 | 799 | Cell division cycle 5-like protein |
6ff7_L | 0.0 | 2 | 792 | 3 | 799 | Cell division cycle 5-like protein |
6icz_L | 0.0 | 2 | 792 | 3 | 799 | Cell division cycle 5-like protein |
6id0_L | 0.0 | 2 | 792 | 3 | 799 | Cell division cycle 5-like protein |
6id1_L | 0.0 | 2 | 792 | 3 | 799 | Cell division cycle 5-like protein |
6qdv_O | 0.0 | 2 | 792 | 3 | 799 | Cell division cycle 5-like protein |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 185 | 204 | KRRELKAAGIDVRQRKRKRR |
2 | 198 | 204 | QRKRKRR |
3 | 199 | 204 | RKRKRR |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Les.4566 | 0.0 | flower| fruit| leaf| root| seed| stem| trichome |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed extensively in shoot and root meristems. {ECO:0000269|PubMed:8917598}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the MAC complex that probably regulates defense responses through transcriptional control and thereby is essential for plant innate immunity. Possesses a sequence specific DNA sequence 'CTCAGCG' binding activity. Involved in mRNA splicing and cell cycle control. May also play a role in the response to DNA damage. {ECO:0000250|UniProtKB:Q99459, ECO:0000269|PubMed:17298883, ECO:0000269|PubMed:17575050, ECO:0000269|PubMed:8917598}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00028 | SELEX | Transfer from AT1G09770 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc04g009950.2.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU095496 | 0.0 | Solanum lycopersicum CDC5-like protein (cdc5) mRNA, complete cds |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001234729.2 | 0.0 | CDC5-like protein | ||||
Swissprot | P92948 | 0.0 | CDC5L_ARATH; Cell division cycle 5-like protein | ||||
TrEMBL | A0A3Q7G0D0 | 0.0 | A0A3Q7G0D0_SOLLC; Uncharacterized protein | ||||
STRING | Solyc04g009950.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6139 | 24 | 31 | Representative plant | OGRP3948 | 17 | 23 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G09770.1 | 0.0 | cell division cycle 5 |
Link Out ? help Back to Top | |
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Phytozome | Solyc04g009950.2.1 |
Entrez Gene | 100134885 |
Publications ? help Back to Top | |||
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