PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Solyc04g008550.2.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 685aa MW: 76587 Da PI: 6.3135 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 17.4 | 7.7e-06 | 125 | 145 | 4 | 25 |
---SGGGGTS--TTTTT-SS-S CS zf-CCCH 4 elCrffartGtCkyGdrCkFaH 25 ++C ff++ G+C GdrC+F H Solyc04g008550.2.1 125 VPCIFFQQ-GFCLKGDRCPFFH 145 79******.***********88 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 11.122 | 31 | 60 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF15663 | 2.6E-11 | 32 | 86 | No hit | No description |
SMART | SM00356 | 0.0023 | 32 | 59 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 10.953 | 62 | 88 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.015 | 64 | 87 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.948 | 121 | 148 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.1E-4 | 122 | 147 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.01E-5 | 123 | 146 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF14608 | 0.085 | 126 | 145 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 685 aa Download sequence Send to blast |
MVGPTPPQKL QIQPPPSSTP AVAPSAEEEA LKRNTDCVYF LASPLTCKKG SECEYRHSDV 60 ARLNPRDCYY WLNGSCLNPK CAFRHPPLDG LLGAQVTTPK GSSAPPVASV APTPNVPYGS 120 SKQGVPCIFF QQGFCLKGDR CPFFHAPLFG SNKAPPHPVS TASASTEKTN FKAFGGLEKC 180 VQEKTFFQTN IWKSGELSVQ AQPVEKLKTP LPKNNAVFNG NVLPSTPVID VAHNRHKPKS 240 VPPPNGNPVG RSNRVQQSAR FDDHSNFQNK DDEISRELSP GFDVLVDDEL RVADVDQDMY 300 HDGYGHDSHD RLPGRSGRVQ HRTSSERVQG ESAHLERRRY GRAHSPEDVR ESDLRHRLSK 360 HNRVNGLRSV ISQDYASEKH VEDRGYRSSR RDRPYVPSHD SSLASRLRGR IKLPSRSPSP 420 TNGTDMRLDR ARDRGRLSSE RPQLFSQQGR LRDRIKGRVQ EDLNDSGRNN SGPRIRRDVS 480 ENDSNFSGPR SLAELKGRKT AETNEQNIDE QQALGKRKFQ KRDDYQQTGG DNISFDGPMP 540 LQEILKRKRN SKTGMTSDKS EDHQHERNDH ALPVVTSSIS RNNTDFEQKE ESDPPSGVLA 600 DHKSPAHHVA NELEAEEGMI MEEADDQDPE AEGHDQRDGD YDYEQVDGED YNLDEGENID 660 AGEEYLDEDD DEDEFAKKMG VVFS* |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Les.24476 | 0.0 | fruit| leaf| root |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Solyc04g008550.2.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004236893.1 | 0.0 | zinc finger CCCH domain-containing protein 17 | ||||
TrEMBL | A0A3Q7FW52 | 0.0 | A0A3Q7FW52_SOLLC; Uncharacterized protein | ||||
STRING | Solyc04g008550.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4024 | 16 | 33 |
Representative plant | OGRP2455 | 12 | 20 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Solyc04g008550.2.1 |
Publications ? help Back to Top | |||
---|---|---|---|
|