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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Solyc04g007210.2.1 |
Common Name | LOC101255581 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family |
CO-like |
Protein Properties |
Length: 429aa MW: 48719.4 Da PI: 5.1304 |
Description |
CO-like family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Solyc04g007210.2.1 | genome | ITAG | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-B_box | 30.5 | 7.4e-10 | 16 | 59 | 3 | 40 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
+r C+++ +k+++++C ++ +lC++C ++ H+ H++v
Solyc04g007210.2.1 16 ARACDNCIRKRARWYCAADDAFLCQSCDSSVHSAnplarrHERV 59
578*****************************667888888876 PP
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2 | CCT | 69 | 1.2e-23 | 373 | 416 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44
Rea++lRYkeKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk++
Solyc04g007210.2.1 373 REARVLRYKEKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRT 416
9*****************************************86 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 429 aa
Download sequence Send
to blast |
MSSEKKLANA MGAKTARACD NCIRKRARWY CAADDAFLCQ SCDSSVHSAN PLARRHERVR 60 LKTSSFKSSD DFPNLESTVS GLGSGSGSGS DSIPSWHCGF TRKARTPRYG NKHAKRVKST 120 EEEEEEEEMK NPIQLVVPEI LSDENSHDEN EEEQLLYRVP IFDPFMADGS NYGNEYSSNK 180 VDFNQDMNTF QGLLAPSEME LAEFAADVVS LLGKGLDDEE SFNYMEGLGF LEKHDEKLVK 240 VEDEGEVGFV NMISTNNQVD YSEFDMVGET FELKFDYDSQ VINNLDEDNK KVEFLEINYD 300 SGKNNNKIML NLDYESVLKS WGDKRFPWTT GVRPEVDFND CWPVCMGNCG KIHSYGDIAI 360 MNGHGGGVVD EGREARVLRY KEKRRTRLFS KKIRYEVRKL NAEKRPRMKG RFVKRTNFAP 420 TPFPSLNK*
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Nucleic Localization
Signal ? help
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 |
No. |
Start |
End |
Sequence |
1 | 383 | 399 | RRTRLFSKKIRYEVRKL |
Best hit in Arabidopsis thaliana ? help
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Hit ID |
E-value |
Description |
AT1G25440.1 | 1e-88 | B-box type zinc finger protein with CCT domain |