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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Solyc04g007000.1.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
|
| Family |
RAV |
| Protein Properties |
Length: 373aa MW: 42221.9 Da PI: 9.5267 |
| Description |
RAV family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Solyc04g007000.1.1 | genome | ITAG | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | AP2 | 42.9 | 1.2e-13 | 65 | 113 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
s++kGV + +grW A+I++ ++r++lg+f +eeAa+a++ a+++++g
Solyc04g007000.1.1 65 SKFKGVVPQP-NGRWGAQIYEK-----HQRIWLGTFNGEEEAARAYDIAAQRFRG 113
79****9888.8*********3.....5*************************98 PP
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| 2 | B3 | 93 | 2.1e-29 | 203 | 296 | 1 | 85 |
EEEE-..-HHHHTT-EE--HHH.HTT.........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82
f+kv tpsdv+k++rlv+pk++ae++ + ++ +++ l +ed +g+ W+++++y+++s++yvltkGW+++vk+++Lk+gD+v F
Solyc04g007000.1.1 203 FEKVVTPSDVGKLNRLVIPKQHAERYfplvakvnkNDNTSKGVLLNFEDMNGKMWRFRYSYWNSSQSYVLTKGWSRYVKEKKLKAGDIVSF 293
99*****************************9999778889************************************************** PP
EE- CS
B3 83 kld 85
k+
Solyc04g007000.1.1 294 KRC 296
*43 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 373 aa
Download sequence Send
to blast |
MEVSCIDQEI STTSDSPSTI SPAGSPRQMG SGVSVVTDAD STNGVEAESK NTTITNNNNN 60
KLPSSKFKGV VPQPNGRWGA QIYEKHQRIW LGTFNGEEEA ARAYDIAAQR FRGRDAVTNF 120
KPLFDFQTEE IEISFLNSRS KVEIVEMLRK HTYNDELQHA KKVYNNNTFE MNGRSTCHTN 180
TNIATFSLDT NEKVANIASE LLFEKVVTPS DVGKLNRLVI PKQHAERYFP LVAKVNKNDN 240
TSKGVLLNFE DMNGKMWRFR YSYWNSSQSY VLTKGWSRYV KEKKLKAGDI VSFKRCSGVE 300
IEDKLLIDSK NRIIRGEQVK MVRLFGVNIC KVQDVSNNVV VEKNMSVGKR MREMELLAFE 360
CSKKQRVIID AL*
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| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 5os9_A | 2e-49 | 200 | 312 | 5 | 113 | B3 domain-containing transcription factor NGA1 |
| 5os9_B | 2e-49 | 200 | 312 | 5 | 113 | B3 domain-containing transcription factor NGA1 |
| Search in ModeBase |
| Expression --
Description ? help
Back to Top |
| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in all tissues examined: Roots, rosette leaves, cauline leaves, inflorescence stems, flowers and siliques. Highest expression in roots and rosette leaves. Very low expression in flowers. {ECO:0000269|PubMed:9862967}. |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Binds specifically to bipartite recognition sequences composed of two unrelated motifs, 5'-CAACA-3' and 5'-CACCTG-3'. May function as negative regulator of plant growth and development. {ECO:0000269|PubMed:15040885, ECO:0000269|PubMed:9862967}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Down-regulated by brassinosteroid and zeatin. {ECO:0000269|PubMed:15040885}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | EU164416 | 0.0 | Solanum lycopersicum RAV1 gene, promoter region and complete cds |
| Publications
? help Back to Top |
- Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
Theor. Appl. Genet., 2005. 112(1): p. 72-84
[PMID:16208505] - Li CW, et al.
Tomato RAV transcription factor is a pivotal modulator involved in the AP2/EREBP-mediated defense pathway.
Plant Physiol., 2011. 156(1): p. 213-27
[PMID:21398258] - Matías-Hernández L,Aguilar-Jaramillo AE,Marín-González E,Suárez-López P,Pelaz S
RAV genes: regulation of floral induction and beyond.
Ann. Bot., 2014. 114(7): p. 1459-70
[PMID:24812253] - Mittal A,Jiang Y,Ritchie GL,Burke JJ,Rock CD
AtRAV1 and AtRAV2 overexpression in cotton increases fiber length differentially under drought stress and delays flowering.
Plant Sci., 2015. 241: p. 78-95
[PMID:26706061] - Huang Y,Feng CZ,Ye Q,Wu WH,Chen YF
Arabidopsis WRKY6 Transcription Factor Acts as a Positive Regulator of Abscisic Acid Signaling during Seed Germination and Early Seedling Development.
PLoS Genet., 2016. 12(2): p. e1005833
[PMID:26829043] - Zhao Y, et al.
ABA receptor PYL9 promotes drought resistance and leaf senescence.
Proc. Natl. Acad. Sci. U.S.A., 2016. 113(7): p. 1949-54
[PMID:26831097]
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