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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Solyc04g006980.1.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family |
TCP |
Protein Properties |
Length: 376aa MW: 42768 Da PI: 8.7075 |
Description |
TCP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Solyc04g006980.1.1 | genome | ITAG | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | TCP | 152 | 3.8e-47 | 105 | 245 | 2 | 133 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa....sec...eaesssssasns 85
+gkkdrhski+T++g RdRRvRls+++a++fFdLqd+LGfdk+sktieWL+ +++ aik+l +++ +++ ++ +++sss +++++
Solyc04g006980.1.1 105 TGKKDRHSKICTAQGVRDRRVRLSLHIARKFFDLQDMLGFDKASKTIEWLFSKSNNAIKDLSENTPQKEysdgNKIvinSNNSSSYEGKSD 195
79**************************************************************333333333233455555555555555 PP
TCP 86 ssgkaaksaa.kskksqksaasalnlak.esrakarararertrekmrik 133
s ++++++ ++ ++k++ ++n++k esr+karararert+ekm+ik
Solyc04g006980.1.1 196 SFMSECEENSiNELGKDKEKIMQNNPHKrESREKARARARERTKEKMMIK 245
55588888876666666666666788889******************998 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 376 aa
Download sequence Send
to blast |
MFPSSNNHDT FSYTSKTYLE RSFTYDHQNP SSSSRQEDNP FFLNFPSPFL DHNESPLSQI 60 LPQDHHVKEG NLTHLSSETS KEEMSIEAKP SSKKRSLSTT PRKRTGKKDR HSKICTAQGV 120 RDRRVRLSLH IARKFFDLQD MLGFDKASKT IEWLFSKSNN AIKDLSENTP QKEYSDGNKI 180 VINSNNSSSY EGKSDSFMSE CEENSINELG KDKEKIMQNN PHKRESREKA RARARERTKE 240 KMMIKGLEKG NPSNMFDQLG SSRSNSGFLD QDSNNNSYNT SVNQEKGSPH EANSQSLEHH 300 FPIQNYLGGA SNSSTIDVGN CFMSFHGNWE INYAPMKSTN YSTTFAGNPS SIYLAQQYQT 360 LDQEKNLSSK HHRLE*
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