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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Solyc04g005600.1.1 |
| Common Name | LOC101266506 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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| Family |
MYB |
| Protein Properties |
Length: 332aa MW: 38139.6 Da PI: 7.2359 |
| Description |
MYB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Solyc04g005600.1.1 | genome | ITAG | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 46.1 | 1.1e-14 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g+WT +Ed++l+ +v ++G g+W+ + + g+ R++ +c++rw +yl
Solyc04g005600.1.1 14 KGPWTHDEDQKLLAYVDEHGYGSWSDLPLRAGLQRCGRSCRLRWINYL 61
79********************************************97 PP
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| 2 | Myb_DNA-binding | 48.4 | 2.2e-15 | 67 | 110 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
rg+++ eE+ + +++++lG++ W+ Ia++++ +R+++++k++w++
Solyc04g005600.1.1 67 RGKFSSEEERTIFQLHALLGNR-WSIIASHLP-NRSDNEIKNYWNT 110
89********************.*********.***********97 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 332 aa
Download sequence Send
to blast |
MGRSPCLDKD GLKKGPWTHD EDQKLLAYVD EHGYGSWSDL PLRAGLQRCG RSCRLRWINY 60
LRPNIKRGKF SSEEERTIFQ LHALLGNRWS IIASHLPNRS DNEIKNYWNT RLKKRLINMG 120
IDPMTHQPKR DGSNYKSIAS LSHMAEWETA RLEAEARLVR NKSTYNNNNN NNNNNNNNNN 180
NNLYRRPHNT LHRIPCLDIL KAWQMSRTNV PTINDISAIL LDGFIKNTRT KICDSTTRST 240
FNNIEENVEV GEDLCIFEDT ITKDNDIQTE FSIIEGLDEL FPEYGYSQNP GNYSSEVQMD 300
GCFGNFEDNK STNWNNIAHL VMTSPIGSPL L*
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in trichomes, stems, carpels, petals and stamens. {ECO:0000269|PubMed:18805951}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Functions as a repressor of epidermal cell outgrowth and negatively regulate trichome branch formation (PubMed:18805951, PubMed:21070410). Acts as both a positive and negative regulator of cellular outgrowth. Promotes both trichome expansion and branch formation (PubMed:21070410). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). May play a role in the regulation of cuticle formation in vegetative organs (PubMed:24169067). {ECO:0000269|PubMed:18805951, ECO:0000269|PubMed:21070410, ECO:0000269|PubMed:23709630, ECO:0000269|PubMed:24169067}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | CU468639 | 0.0 | S.lycopersicum DNA sequence from clone SL_MboI-101P13 on chromosome 4, complete sequence |
