PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc04g005280.2.1
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 316aa    MW: 35503.8 Da    PI: 8.9058
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc04g005280.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH48.41.7e-153180255
                        HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                        r +h+  E+rRR++iN++f+ Lr+l+P+     ++K + a+ L ++++Y+++Lq
  Solyc04g005280.2.1 31 RSKHSVTEQRRRSKINERFQILRDLIPHT----DQKRDTASFLLEVIQYVQYLQ 80
                        899*************************8....8*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.49E-1827101IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-2128101IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.8282979IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.40E-133184No hitNo description
PfamPF000107.4E-133180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-113585IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MRLVLLRRMP HLLAVIPKVY GKSNEKASAL RSKHSVTEQR RRSKINERFQ ILRDLIPHTD  60
QKRDTASFLL EVIQYVQYLQ EKVQKYEGPY QPWSSEPTKL MPWRNSHWRM QSLPAQPHAL  120
KNGSGPESTY LGRFDENLAT VTSTMQPNQQ NPIESHTSRD VSFKALDQQN ELANKSITTP  180
IPLQAGMKMS VPNNSAFSEP QPRPVSDQCP NTIDALNHDE DDVIDGGRIS LSSSYSQGFL  240
TSLSQALQST GLDLSKATIS VQIDFGKRAN QAMTSGPSIA KDDENPTLSG HQHTDHFREA  300
SNDEDMNQAQ KRLKI*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.90040.0floral bud| flower| fruit| root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Functional Description ? help Back to Top
Source Description
UniProtPositive brassinosteroid-signaling protein.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00219DAPTransfer from AT1G69010Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc04g005280.2.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by heat treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010319480.10.0transcription factor BIM2-like isoform X2
RefseqXP_019068770.10.0transcription factor BIM2-like isoform X1
SwissprotQ9CAA42e-91BIM2_ARATH; Transcription factor BIM2
TrEMBLM0ZP140.0M0ZP14_SOLTU; Uncharacterized protein
STRINGSolyc04g005280.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA44262337
Representative plantOGRP13601747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.19e-94BES1-interacting Myc-like protein 2
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  2. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]