PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc03g122030.1.1 | ||||||||
Common Name | LOC101257846 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | Trihelix | ||||||||
Protein Properties | Length: 364aa MW: 40266.9 Da PI: 9.9011 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 51 | 3.7e-16 | 65 | 152 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspk...qCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W+++ + +Liea e+ +l+rg+lk+++W++v++ + +++ ++++pk qCk++++ ++k+yk +k + + s++p+fd+l+ Solyc03g122030.1.1 65 CWSEEATAVLIEAWGERYMELSRGNLKQKHWKDVADIVsSREDYRKTPKtdiQCKNRIDTVKKKYKLEKSKIAAG--QGPSKWPFFDKLD 152 7*************************************856666666644449*****************99997..56668******97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 8.5E-26 | 63 | 153 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0010029 | Biological Process | regulation of seed germination | ||||
GO:0010431 | Biological Process | seed maturation | ||||
GO:0048831 | Biological Process | regulation of shoot system development | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 364 aa Download sequence Send to blast |
MENDEETQSG GSGSPESPRS NGRITVTVAS APPQNTLTLA LPIQQSRPAG ASGGGGGSGG 60 GREDCWSEEA TAVLIEAWGE RYMELSRGNL KQKHWKDVAD IVSSREDYRK TPKTDIQCKN 120 RIDTVKKKYK LEKSKIAAGQ GPSKWPFFDK LDMLIGPTAK INPTVAAGPS NLYSGNQHVP 180 MGIPMGVRSL PQLRQHQQLQ KQKQPSRKRP HMDSDTSESE SEPDLSPAST DSFPPGTFQK 240 KRPRFQKEML NSSALRQGGI GEASGNKNWG NSVRELTQAI LKFGEAYEQT ETAKLHQMVE 300 MEKQRMKFAK DMELQRMQFF MNTQLEIAQL KHRRSENSNH HSNNHAAAAS NHNNNNNNSD 360 NSI* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Les.15045 | 0.0 | callus| cell culture |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00356 | DAP | Transfer from AT3G14180 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc03g122030.1.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU124740 | 0.0 | Solanum lycopersicum chromosome 3 clone C03HBa0295I12, complete sequence |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004235567.1 | 0.0 | trihelix transcription factor ASIL2 | ||||
Refseq | XP_025886017.1 | 0.0 | trihelix transcription factor ASIL2 | ||||
Swissprot | Q9LJG8 | 1e-103 | ASIL2_ARATH; Trihelix transcription factor ASIL2 | ||||
TrEMBL | A0A3Q7GLR1 | 0.0 | A0A3Q7GLR1_SOLLC; Uncharacterized protein | ||||
STRING | Solyc03g122030.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA10332 | 18 | 23 | Representative plant | OGRP487 | 16 | 84 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G14180.1 | 2e-66 | sequence-specific DNA binding transcription factors |
Link Out ? help Back to Top | |
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Phytozome | Solyc03g122030.1.1 |
Entrez Gene | 101257846 |
Publications ? help Back to Top | |||
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