PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc03g121740.1.1
Common NameLOC101255286
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB
Protein Properties Length: 366aa    MW: 41176.5 Da    PI: 7.6351
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc03g121740.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.74.7e-171461148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        rg W++eEde+l+++++ +G  +W+++++  g+ R++k+c++rw +yl
  Solyc03g121740.1.1 14 RGLWSPEEDEKLINYITTYGHACWSSVPKLAGLQRCGKSCRLRWINYL 61
                        788*******************************************97 PP
2Myb_DNA-binding46.48.9e-1567109145
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                         rg+++++E  l+++++  lG++ W+ Ia++++ gRt++++k++w+
  Solyc03g121740.1.1  67 RGSFSPQEAALIIELHGILGNR-WAQIAKHLP-GRTDNEVKNFWN 109
                         899*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.7E-26564IPR009057Homeodomain-like
PROSITE profilePS5129417.223961IPR017930Myb domain
SuperFamilySSF466893.06E-2811108IPR009057Homeodomain-like
SMARTSM007171.9E-121363IPR001005SANT/Myb domain
PfamPF002497.9E-151461IPR001005SANT/Myb domain
CDDcd001674.34E-111761No hitNo description
PROSITE profilePS5129424.82662116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.3E-2465116IPR009057Homeodomain-like
SMARTSM007175.8E-1566114IPR001005SANT/Myb domain
PfamPF002491.5E-1367110IPR001005SANT/Myb domain
CDDcd001679.66E-1169109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0009834Biological Processplant-type secondary cell wall biogenesis
GO:0009901Biological Processanther dehiscence
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MGHHTCCNKQ KVKRGLWSPE EDEKLINYIT TYGHACWSSV PKLAGLQRCG KSCRLRWINY  60
LRPDLKRGSF SPQEAALIIE LHGILGNRWA QIAKHLPGRT DNEVKNFWNS SIKKKLHLSH  120
GILPDNSIII PTYNNLITNP IPNPSFDNFY SFNPNVPSTN SFMSSISSPL ILDQMNNINH  180
NGDLNLTNHV IMPNSLPNLS FDSISNDPTW FNFNYPNHLQ HDLEYNPSVI KQDNSINSMV  240
TSNISLNCTN GENFMDSTNA AIKNHQDLMM TLPKLSEMIK ENEDGILEST PIVSQHSDTM  300
VVKSALPCTS YIMNPHNNLH RVVNKVELMK SLHMSSSSSS SSSTSSSWSA LSCNQFMMNP  360
RTWDS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-30141167108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc03g121740.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2384494e-66Solanum lycopersicum chromosome 3 clone C03HBa0112C24, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010318495.10.0transcription factor MYB26-like
TrEMBLM1DDW80.0M1DDW8_SOLTU; Uncharacterized protein
STRINGSolyc03g121740.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13890.22e-79myb domain protein 26
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]