PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc03g120910.2.1
Common NameLOC101257548
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family HD-ZIP
Protein Properties Length: 837aa    MW: 92006.4 Da    PI: 6.4668
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc03g120910.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.98.1e-191674357
                        --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
            Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                        k  ++t+eq+e+Le+l++ +++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  Solyc03g120910.2.1 16 KYVRYTPEQVEALERLYHDCPKPSSMRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 74
                        5679*****************************************************97 PP
2START173.61.2e-541603682205
                         HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EE CS
               START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..ga 90 
                         +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s++++g a+ra+g+v  +++  v+e+l+d++ W ++++ +e+l+v+ ++  g+
  Solyc03g120910.2.1 160 IAEETLTEFLSKATGTAVEWVQMPGMKPGPDSIGIIAISHGCTGVAARACGLVGLEPT-RVSEILKDRPSWYRDCRVVEVLNVLPTAngGT 249
                         789*******************************************************.9999999999****************9999** PP

                         EEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXX CS
               START  91 lqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlp 177
                         ++l +++l+a+++l+p Rdf+ +Ry+  + +g++v++++S+ ++q+ p+    +++vRae lpSg+li+p+++g+s +++v+h++l+++++
  Solyc03g120910.2.1 250 IELLYMQLYAPTTLAPaRDFWLLRYTTVMDDGSLVVCERSLGNTQNGPSmppVQNFVRAEILPSGYLIRPCEGGGSIIHIVDHMNLEAWSV 340
                         **********************************************99988899************************************* PP

                         HHHHHHHHHHHHHHHHHHHHHHTXXXXX CS
               START 178 hwllrslvksglaegaktwvatlqrqce 205
                         +++lr+l++s+++ ++kt+va+l+++++
  Solyc03g120910.2.1 341 PEVLRPLYESSAVLAQKTTVAALRYLRQ 368
                         ***********************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.3541175IPR001356Homeobox domain
SMARTSM003895.2E-161379IPR001356Homeobox domain
SuperFamilySSF466898.55E-171578IPR009057Homeodomain-like
CDDcd000867.95E-171676No hitNo description
PfamPF000462.2E-161774IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.1E-181874IPR009057Homeodomain-like
CDDcd146861.37E-668107No hitNo description
PROSITE profilePS5084826.27150378IPR002913START domain
CDDcd088753.41E-75154370No hitNo description
SMARTSM002341.0E-42159369IPR002913START domain
Gene3DG3DSA:3.30.530.208.1E-23159364IPR023393START-like domain
SuperFamilySSF559612.88E-37159371No hitNo description
PfamPF018521.8E-52160368IPR002913START domain
PfamPF086701.2E-49692835IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0010014Biological Processmeristem initiation
GO:0010075Biological Processregulation of meristem growth
GO:0010087Biological Processphloem or xylem histogenesis
GO:0048263Biological Processdetermination of dorsal identity
GO:0080060Biological Processintegument development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 837 aa     Download sequence    Send to blast
MASCKDGKSV VLDNGKYVRY TPEQVEALER LYHDCPKPSS MRRQQLIREC PILSNIEPKQ  60
IKVWFQNRRC REKQRKEASR LQSVNRKLTA MNKLLMEEND RLQKQVSQLV YENGYFRRQS  120
HSTPLATKDT SCDSVVTSGQ HHLTSQHPPR DASPAGLLSI AEETLTEFLS KATGTAVEWV  180
QMPGMKPGPD SIGIIAISHG CTGVAARACG LVGLEPTRVS EILKDRPSWY RDCRVVEVLN  240
VLPTANGGTI ELLYMQLYAP TTLAPARDFW LLRYTTVMDD GSLVVCERSL GNTQNGPSMP  300
PVQNFVRAEI LPSGYLIRPC EGGGSIIHIV DHMNLEAWSV PEVLRPLYES SAVLAQKTTV  360
AALRYLRQIA QEVSQTNVTN WGRRPAALRA LSQRLSRGFN EALNGIADEG WSMLDSDGMD  420
DVTILVNSSP DKLMGLNLPF ANGFSPMSNA VMCAKASMLL QNVPPAILLR FLREHRSEWA  480
DNNIDAYAAA AIKVGPCSLP GARVGNFGGQ VILPLAHTVE HEELLEVIKL EGHSPEDAIM  540
PRDMFLLQLC SGMDENAVGT CAELVFAPID ASFADDAPLL PSGFRIISLE SGKEASSPNR  600
TLDLTSALET GPAENKAAND LHTSGGSSRS VMTIAFQFAF ESHMQESVAS MARQYVRSII  660
SSVQRVALAL SPSHLGSHGG LRLPLGTPEA HTLARWICQS YRCFLGVELL KLNTDQGSES  720
ILKSLWHHSD AIICCSAKAL PVFTFANQAG LDMLETTLVA LQDITLEKIF DDHGKKNLCT  780
EFPQIMQQGF ACLQGGICLS SMSRPISYER AVAWKVMNEE DTAHCICFMF VNWSFV*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Highly expressed the developing vascular elements and the adaxial portion of cotyledons. Expressed in developing ovules, stamens and carpels. Expressed in procambium and shoot meristem. {ECO:0000269|PubMed:14701930, ECO:0000269|PubMed:15705957}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of meristem development to promote lateral organ formation. May regulates procambial and vascular tissue formation or maintenance, and vascular development in inflorescence stems. {ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:15705957, ECO:0000269|PubMed:16617092}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00200DAPTransfer from AT1G52150Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc03g120910.2.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by miR165 and miR166. {ECO:0000269|PubMed:15773855, ECO:0000269|PubMed:16033795, ECO:0000269|PubMed:16617092, ECO:0000269|PubMed:17237362}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004235650.10.0homeobox-leucine zipper protein ATHB-15
RefseqXP_015070892.10.0homeobox-leucine zipper protein ATHB-15
SwissprotQ9ZU110.0ATB15_ARATH; Homeobox-leucine zipper protein ATHB-15
TrEMBLM0ZRW90.0M0ZRW9_SOLTU; Uncharacterized protein
STRINGSolyc03g120910.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45724140
Representative plantOGRP6511671
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  2. Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS
    CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules.
    Development, 2016. 143(3): p. 422-6
    [PMID:26700684]