 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Solyc03g120890.2.1 |
| Common Name | LOC101258142 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
|
| Family |
GATA |
| Protein Properties |
Length: 351aa MW: 37951.8 Da PI: 6.6926 |
| Description |
GATA family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Solyc03g120890.2.1 | genome | ITAG | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GATA | 53.8 | 2.6e-17 | 239 | 273 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
C +C + kTp+WR gp g+ktLCnaCG++y++ +l
Solyc03g120890.2.1 239 CLHCASDKTPQWRTGPLGPKTLCNACGVRYKSGRL 273
99*****************************9885 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0030154 | Biological Process | cell differentiation |
| GO:0045944 | Biological Process | positive regulation of transcription from RNA polymerase II promoter |
| GO:0005634 | Cellular Component | nucleus |
| GO:0005667 | Cellular Component | transcription factor complex |
| GO:0000977 | Molecular Function | RNA polymerase II regulatory region sequence-specific DNA binding |
| GO:0001085 | Molecular Function | RNA polymerase II transcription factor binding |
| GO:0001228 | Molecular Function | transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding |
| GO:0003682 | Molecular Function | chromatin binding |
| GO:0008270 | Molecular Function | zinc ion binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 351 aa
Download sequence Send
to blast |
MEASDLFVSG FFSHAGDEQI PNNINNNCNN FSVDDLLVIP KDDEVMADAF FNSITGNSAD 60
SSNVTVVDSC NSSVSGGDGQ FNGNLSGRSF TDAPFPNSEL CVPFDDLAEL EWLSNFVEES 120
FSSDDVQNLQ FIPVANINSS STVTTDSSSS ATTFSTGPNS PPAFPADTSV PGKARSKRSR 180
AAPCDWSSRL QLLLSPATSS SESNNISPPS VNNTTFATAK ATKAPSKKRE SVETPGRKCL 240
HCASDKTPQW RTGPLGPKTL CNACGVRYKS GRLVPEYRPA SSPTFISARH SNSHRKVLEL 300
RRQKDLQRHQ AHHHQHQLLS QPTIFGVSNG GDEFLLHHHQ NCGPNFRHLI *
|
| Expression --
Description ? help
Back to Top |
| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in the vascular cylinder of roots. Expressed in the differentiation zone of the root stele. {ECO:0000269|PubMed:25265867}. |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). Transcription activator involved in xylem formation. Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867). {ECO:0000250|UniProtKB:Q8LAU9, ECO:0000269|PubMed:25265867}. |
