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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc03g119680.1.1 | ||||||||
Common Name | LOC101265120 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 178aa MW: 20293.2 Da PI: 7.2605 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 26.2 | 1e-08 | 15 | 61 | 1 | 47 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47 k ie++ r+v+fskR+ +++ ++a+v v++fs++gk y Solyc03g119680.1.1 15 KLIESEKARTVSFSKRKRTLFQDVDKFAAQTGADVGVMLFSPSGKPY 61 569*****************************************966 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 16.105 | 7 | 67 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 5.5E-12 | 7 | 66 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.88E-18 | 8 | 87 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.1E-5 | 9 | 29 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.3E-14 | 17 | 62 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.1E-5 | 44 | 65 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 178 aa Download sequence Send to blast |
MENETKKGKQ KIEMKLIESE KARTVSFSKR KRTLFQDVDK FAAQTGADVG VMLFSPSGKP 60 YSHGSTSIEE IIDQYLKVKL EDHQRDHAEG KMNGFEVLGA LHKELQAWNE KEKNRKLMYK 120 IMHSGSEAPP DKHMEEQKLA LKLRVEKIKK ETQAAILVEH LKFDLNVAPE PEEDESS* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc03g119680.1.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027771453.1 | 1e-124 | MADS-box transcription factor 23-like | ||||
TrEMBL | A0A3Q7I4P3 | 2e-89 | A0A3Q7I4P3_SOLLC; Uncharacterized protein | ||||
STRING | Solyc03g119680.1.1 | 1e-127 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1780 | 12 | 60 |
Representative plant | OGRP16 | 17 | 761 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24840.1 | 3e-16 | AGAMOUS-like 61 |
Link Out ? help Back to Top | |
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Phytozome | Solyc03g119680.1.1 |
Entrez Gene | 101265120 |
Publications ? help Back to Top | |||
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