PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

ERF

Protein Properties

Length: 386aa MW: 43278.9 Da PI: 5.1318

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc03g119580.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	48.3	2.5e-15	90	136	3	53
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkl 53 kGVr +k +g+++AeIrdps+ kr++lg+f t e A +a++a r ++ Solyc03g119580.1.1 90 PKGVRMRK-WGKYAAEIRDPSQ---GKRIWLGTFETVEAASQAYEAKRAEF 136 59**99.******964...3*****************999775 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51032	16.818	89	149	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.6E-6	90	101	IPR001471	AP2/ERF domain
Pfam	PF00847	1.1E-8	90	135	IPR001471	AP2/ERF domain
CDD	cd00018	1.10E-17	91	131	No hit	No description
Gene3D	G3DSA:3.30.730.10	6.3E-18	91	132	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	3.53E-14	91	135	IPR016177	DNA-binding domain
SMART	SM00380	7.8E-11	91	145	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.6E-6	112	128	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 386 aa Download sequence Send to blast
MDGCISSVRK VRIVYDDPDA TDSESDDDQN AARFDKNVNR IKRVVKEIVI PVVSWENDFK 60 KCSKLDNIRI KDSKKIHENK KVQLKSTALP KGVRMRKWGK YAAEIRDPSQ GKRIWLGTFE 120 TVEAASQAYE AKRAEFDRII SLGKGKNLSP GPAECSMACT SHPTNGKNRV YSHPSPSSVL 180 DVPTSSAAAP VESNENLTRD MARMPDSGSE DFSLSFEDQM LHEFIKQRQG ISELIEHPLI 240 EQGSISNSVM EMTEVNIRKK TKARQPTIAS CKILTKGTED YSNDKSIFSV LNEPTIMSPI 300 HTELLHLNIE ETAVTGNSLK LLGFDDNALF DKDISQLFDP YADAICLDNT FQCCDGWNEC 360 VYCKIFKDEV DLDEVDLRWL DAVLV*

Sequence ? help Back to Top

Protein Sequence Length: 386 aa Download sequence Send to blast

MDGCISSVRK VRIVYDDPDA TDSESDDDQN AARFDKNVNR IKRVVKEIVI PVVSWENDFK  60
KCSKLDNIRI KDSKKIHENK KVQLKSTALP KGVRMRKWGK YAAEIRDPSQ GKRIWLGTFE  120
TVEAASQAYE AKRAEFDRII SLGKGKNLSP GPAECSMACT SHPTNGKNRV YSHPSPSSVL  180
DVPTSSAAAP VESNENLTRD MARMPDSGSE DFSLSFEDQM LHEFIKQRQG ISELIEHPLI  240
EQGSISNSVM EMTEVNIRKK TKARQPTIAS CKILTKGTED YSNDKSIFSV LNEPTIMSPI  300
HTELLHLNIE ETAVTGNSLK LLGFDDNALF DKDISQLFDP YADAICLDNT FQCCDGWNEC  360
VYCKIFKDEV DLDEVDLRWL DAVLV*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc03g119580.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004236418.1	0.0	uncharacterized protein LOC101265720
TrEMBL	A0A3Q7FWB6	0.0	A0A3Q7FWB6_SOLLC; Uncharacterized protein
STRING	Solyc03g119580.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12718	15	19
Representative plant	OGRP6	16	1718

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68550.2	2e-19	ERF family protein

Link Out ? help Back to Top
Phytozome	Solyc03g119580.1.1

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]