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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Solyc03g117130.2.1 |
| Common Name | SlERF52 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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| Family |
ERF |
| Protein Properties |
Length: 163aa MW: 18646.8 Da PI: 6.7829 |
| Description |
ERF family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Solyc03g117130.2.1 | genome | ITAG | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | AP2 | 59.1 | 1.1e-18 | 7 | 54 | 2 | 53 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkl 53
+y+GVr+++ +g+Wv+eIr+ps ++r++lg++ t e+Aa+a+++a++ +
Solyc03g117130.2.1 7 KYRGVRQRH-WGSWVSEIRHPSL---KTRIWLGTYETSEDAARAYDEAARLM 54
8*******9.**********944...5*********************9876 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 163 aa
Download sequence Send
to blast |
MSRPQQKYRG VRQRHWGSWV SEIRHPSLKT RIWLGTYETS EDAARAYDEA ARLMCGSTAR 60
TNFPYNATES SRFLSSALIA KLQRCNMSSL TATSRRPGKT RLEDKKENEI STLVRDTGDG 120
EERQSESASQ QYMKALEDEH IEQMIEELLD YGSIEMCSVR NE*
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| Functional Description ? help
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| Source |
Description |
| UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
| Function -- GeneRIF ? help
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- ETHYLENE-RESPONSIVE FACTOR 52 is specifically expressed in pedicel abscission zones (AZs) and its expression is suppressed in plants with impaired function of MACROCALYX and JOINTLESS, which regulate pedicel AZ development.[ERF52]
[PMID: 24744429]
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| Publications
? help Back to Top |
- Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
Theor. Appl. Genet., 2005. 112(1): p. 72-84
[PMID:16208505] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
BMC Plant Biol., 2013. 13: p. 229
[PMID:24377444] - Nakano T,Fujisawa M,Shima Y,Ito Y
The AP2/ERF transcription factor SlERF52 functions in flower pedicel abscission in tomato.
J. Exp. Bot., 2014. 65(12): p. 3111-9
[PMID:24744429]
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