PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

MYB

Protein Properties

Length: 334aa MW: 36985 Da PI: 6.062

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc03g116100.2.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56.6	5.8e-18	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd +lv +++q+G+g+W+++++ g+ R+ k+c++rw +yl Solyc03g116100.2.1 14 KGPWTPEEDIILVSYIQQHGPGNWRAVPSNTGLLRCSKSCRLRWTNYL 61 79****************************99**********97 PP
2	Myb_DNA-binding	49.5	9.7e-16	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T+ E++ ++++ ++lG++ W++Ia++++ Rt++++k++w+++l Solyc03g116100.2.1 67 RGNFTEHEEKMIIHLQALLGNR-WAAIASYLP-QRTDNDIKNYWNTHL 112 89******************.*****.**********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.3E-24	5	64	IPR009057	Homeodomain-like
PROSITE profile	PS51294	24.007	9	65	IPR017930	Myb domain
SuperFamily	SSF46689	1.02E-30	11	108	IPR009057	Homeodomain-like
SMART	SM00717	8.7E-15	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	3.0E-16	14	61	IPR001005	SANT/Myb domain
CDD	cd00167	1.67E-11	16	61	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.1E-24	65	117	IPR009057	Homeodomain-like
PROSITE profile	PS51294	19.594	66	116	IPR017930	Myb domain
SMART	SM00717	2.0E-15	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	2.5E-14	67	112	IPR001005	SANT/Myb domain
CDD	cd00167	4.72E-11	69	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009414	Biological Process	response to water deprivation
GO:0009651	Biological Process	response to salt stress
GO:0009737	Biological Process	response to abscisic acid
GO:0009751	Biological Process	response to salicylic acid
GO:0010468	Biological Process	regulation of gene expression
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 334 aa Download sequence Send to blast
MGRPPCCDKI GVKKGPWTPE EDIILVSYIQ QHGPGNWRAV PSNTGLLRCS KSCRLRWTNY 60 LRPGIKRGNF TEHEEKMIIH LQALLGNRWA AIASYLPQRT DNDIKNYWNT HLRKKLKKLQ 120 GNDENSTQEG ESSSSSQSNF SKGQWERRLQ TDIHMARKAL CEALSLDKSD SSANPIPAQQ 180 PVTGSSSYAS SAENISRLLQ NWMKNSPKSS ELSRSNSETT QSSLNNPSIG SGSSPSEGTL 240 SAATPEGFDS FFSEGNAFTP ENSAIFQVES KPNFPNMNSE NGYLFQAESK PSLEDSQVPF 300 TLLEKWLFDD AINAPAQEDQ FMAMGLGESA DFF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	4e-26	14	116	27	128	MYB TRANSFORMING PROTEIN
1mse_C	3e-26	14	116	4	105	C-Myb DNA-Binding Domain
1msf_C	3e-26	14	116	4	105	C-Myb DNA-Binding Domain
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Les.11552	0.0	callus\| fruit\| leaf

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expression in flowers increases as the flowers develop. {ECO:0000269\|PubMed:1840903}.
Uniprot	TISSUE SPECIFICITY: Expressed in flowers, leaves and weakly in seed pods. {ECO:0000269\|PubMed:1840903}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. {ECO:0000305}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00579	DAP	Transfer from AT5G62470	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc03g116100.2.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004236011.1	0.0	myb-related protein 306
Swissprot	P81392	1e-135	MYB06_ANTMA; Myb-related protein 306
TrEMBL	A0A3Q7FU79	0.0	A0A3Q7FU79_SOLLC; Uncharacterized protein
STRING	Solyc03g116100.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12	24	2154
Representative plant	OGRP5	17	1784

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62470.2	1e-104	myb domain protein 96

Link Out ? help Back to Top
Phytozome	Solyc03g116100.2.1
Entrez Gene	101267793

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505] Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C Expression patterns of myb genes from Antirrhinum flowers. Plant Cell, 1991. 3(2): p. 115-25 [PMID:1840903]