PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

NAC

Protein Properties

Length: 327aa MW: 37545.4 Da PI: 8.5777

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc03g115850.2.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	174.3	3.5e-54	18	144	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 lppGfrFhPtdeel+++yL kkv + ++++ +i +vd++k+ePw+Lp k+k +ekewyfF+ rdkky+tg r+nrat++gyWkatgkdke Solyc03g115850.2.1 18 LPPGFRFHPTDEELITHYLSKKVVDMNFSA-IAIGDVDMNKIEPWELPWKAKIGEKEWYFFCVRDKKYPTGLRTNRATAAGYWKATGKDKE 107 79***********************999.88***********98999********************************** PP NAM 92 vlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 +++ +++lvg+kktLvfy+grap+gekt+Wv heyrle Solyc03g115850.2.1 108 IFR-GRSLVGMKKTLVFYRGRAPRGEKTNWVTHEYRLE 144 .999****************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.7E-61	13	168	IPR003441	NAC domain
PROSITE profile	PS51005	58.126	18	168	IPR003441	NAC domain
Pfam	PF02365	1.0E-27	19	143	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 327 aa Download sequence Send to blast
MENFSASVKM DDQQQMELPP GFRFHPTDEE LITHYLSKKV VDMNFSAIAI GDVDMNKIEP 60 WELPWKAKIG EKEWYFFCVR DKKYPTGLRT NRATAAGYWK ATGKDKEIFR GRSLVGMKKT 120 LVFYRGRAPR GEKTNWVTHE YRLEGRLSLN NLPKTVKNDW VICRVFQKTT GGKKIHISGL 180 VRANSDENEM VNTVLPPLTD SSPSHVHCFS NYVTTQKNQE NNMINSFNNS PNFPLLSNSI 240 DIFQRNSLPT SFTWNQNVPL QHNFPQPGSF PIQDPATLRN LLENYGHQSF KKETDMISVS 300 QETGISTDRN TEITSAQQDL DCFWTY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-55	11	174	10	171	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-55	11	174	10	171	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-55	11	174	10	171	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-55	11	174	10	171	NO APICAL MERISTEM PROTEIN
3swm_A	2e-55	11	174	13	174	NAC domain-containing protein 19
3swm_B	2e-55	11	174	13	174	NAC domain-containing protein 19
3swm_C	2e-55	11	174	13	174	NAC domain-containing protein 19
3swm_D	2e-55	11	174	13	174	NAC domain-containing protein 19
3swp_A	2e-55	11	174	13	174	NAC domain-containing protein 19
3swp_B	2e-55	11	174	13	174	NAC domain-containing protein 19
3swp_C	2e-55	11	174	13	174	NAC domain-containing protein 19
3swp_D	2e-55	11	174	13	174	NAC domain-containing protein 19
4dul_A	1e-55	11	174	10	171	NAC domain-containing protein 19
4dul_B	1e-55	11	174	10	171	NAC domain-containing protein 19
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Les.8961	0.0	cell culture\| flower\| leaf

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc03g115850.2.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001308203.1	0.0	NAC domain-containing protein
Swissprot	Q9FLJ2	1e-124	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	A0A3Q7FU25	0.0	A0A3Q7FU25_SOLLC; Uncharacterized protein
STRING	Solyc03g115850.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA152	24	279
Representative plant	OGRP17	15	800

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61430.1	1e-123	NAC domain containing protein 100

Link Out ? help Back to Top
Phytozome	Solyc03g115850.2.1

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505] Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]