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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Solyc03g115010.1.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family |
TCP |
Protein Properties |
Length: 342aa MW: 38662 Da PI: 5.8463 |
Description |
TCP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Solyc03g115010.1.1 | genome | ITAG | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | TCP | 95.7 | 8.9e-30 | 53 | 173 | 3 | 112 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..........ssssaseceaesssssas 83
g+kdrhsk++T +g+RdRR+Rls+++a++++dLqd+LG+ ++sk ++WLl++ k i+ l+ + +++s++e+++++ + ++
Solyc03g115010.1.1 53 GGKDRHSKVCTIRGLRDRRIRLSVPTAIQLYDLQDRLGLSQPSKVVDWLLEATKLDIDTLPPLpvppeyftrfQQPSHEEFSDVRAQWLNA 143
78*************************************************************4444444444333333333334433333 PP
TCP 84 nsssgkaaksaa.kskksqksaasalnlak 112
n s ++ +++ s+++++++ ++ l +
Solyc03g115010.1.1 144 NTSYLEHGRNKSiASNEESNQEDNMFTLGN 173
333333333333355555555555555554 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0009965 | Biological Process | leaf morphogenesis |
GO:0030154 | Biological Process | cell differentiation |
GO:0031347 | Biological Process | regulation of defense response |
GO:0045962 | Biological Process | positive regulation of development, heterochronic |
GO:0009507 | Cellular Component | chloroplast |
Sequence ? help Back to Top |
Protein Sequence Length: 342 aa
Download sequence Send
to blast |
MNSSSGNNFE TKQESNNDSR LASKTTSAPP SSTSRQWGAN KNPRIVRVSR TFGGKDRHSK 60 VCTIRGLRDR RIRLSVPTAI QLYDLQDRLG LSQPSKVVDW LLEATKLDID TLPPLPVPPE 120 YFTRFQQPSH EEFSDVRAQW LNANTSYLEH GRNKSIASNE ESNQEDNMFT LGNQRSSNLP 180 GMPFNSYNYQ WDHQPNSNLS LGHFGHNHSF SSQIDDDQSH QNTSFPLSLG SSSSPFPSSS 240 QLYFNPITTT FQPIVPSPNY ITNHHPIESH DPRANMNHFN FLSSTTSHNN QLVMPTLNLI 300 SSQMKPFSLN NDPRWMSSRD DEDDDDDDDD DDNQPHEGRA I*
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Function -- GeneRIF ? help
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- A clear negative correlation was observed between miR319 and its target TEOSINTE BRANCHED1/CYCLOIDEA/PRO-LIFERATING CELL FACTOR 4 (TCP4) in leaf, stem, and root under root-knot nematode stress.
[PMID: 26002970]
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AC238446 | 0.0 | Solanum lycopersicum chromosome 3 clone C03HBa0051C24, complete sequence |
GenBank | AC238469 | 0.0 | Solanum lycopersicum chromosome 3 clone C03HBa0291G05, complete sequence |
GenBank | EU124739 | 0.0 | Solanum lycopersicum chromosome 3 clone C03HBa0233O20, complete sequence |
Publications
? help Back to Top |
- Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505] - Parapunova V, et al.
Identification, cloning and characterization of the tomato TCP transcription factor family. BMC Plant Biol., 2014. 14: p. 157 [PMID:24903607] - Zhao W, et al.
Identification of jasmonic acid-associated microRNAs and characterization of the regulatory roles of the miR319/TCP4 module under root-knot nematode stress in tomato. J. Exp. Bot., 2015. 66(15): p. 4653-67 [PMID:26002970]
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