PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc03g114720.2.1
Common NameLOC101263596
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 557aa    MW: 60848.4 Da    PI: 8.5989
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc03g114720.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH51.71.6e-16259308255
                         HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         r +h++ E+rRR++iN++f+ Lr ++P++    ++K +Ka+ L +++eYI+ Lq
  Solyc03g114720.2.1 259 RSKHSATEQRRRSKINDRFQMLRGIIPNS----DQKRDKASFLLEVIEYIHFLQ 308
                         889*************************9....9******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.102.1E-23254325IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.59E-19255326IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.272257307IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.13E-15259312No hitNo description
PfamPF000103.8E-14259308IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.4E-13263313IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0009742Biological Processbrassinosteroid mediated signaling pathway
GO:1902448Biological Processpositive regulation of shade avoidance
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 557 aa     Download sequence    Send to blast
MELPQPRPFG TEGRKTTHDF LSLYSPVQQD PRPPQGGYLK THDFLQPLEQ AEKTLREEET  60
NVEVATVEKP PPPVAATPSG EHILPGGIGT FSISYLHQRI PKPEASLFSV AQASSTDRND  120
ENSNCSSFTG SGFTLWDESA VKKGKTGKEN SGGDRHVLRE GGVNTGGVQP TTSLEWQSQS  180
SSNHKHNTTA LSSLSSAHQS SPLKSQSFLH MITSAKSAQD DDDDDEDFVI KKEPQSHLRG  240
SLSVKVDGKG NDQKPSTPRS KHSATEQRRR SKINDRFQML RGIIPNSDQK RDKASFLLEV  300
IEYIHFLQEK VHKYEESYQG WDNEPPKLPL SKCHRTTHGV SNLPQRIINA SSASLTYAGK  360
FDESIMGISS ANPINVQKLE PNISSTGLKD KGQQPGLTNK PTTVPMHPNT FSFSGTSSTA  420
ALYSSKLIAD TDKLESKSHS QFSLSRSHMT DYAIPNANPE RLELPIESGT ISISSAYSQG  480
LLNTLTQALH SSGVDLTQAN ISVQIDLGKR ANGRVNSSAS TVKGDNVSTS NQPIPKSRVT  540
TTREEPDHAF KRRKTS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.47110.0cell culture| fruit| leaf| seed
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots. {ECO:0000269|PubMed:12679534}.
Functional Description ? help Back to Top
Source Description
UniProtPositive brassinosteroid-signaling protein. Transcription factor that bind specifically to the DNA sequence 5'-CANNTG-3'(E box). Can bind individually to the promoter as a homodimer or synergistically as a heterodimer with BZR2/BES1. Does not itself activate transcription but enhances BZR2/BES1-mediated target gene activation. {ECO:0000269|PubMed:15680330}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00498DAPTransfer from AT5G08130Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc03g114720.2.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by cold treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0137860.0Lycopersicon esculentum clone 132679F, mRNA sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010318888.10.0transcription factor BIM1 isoform X2
SwissprotQ9LEZ31e-90BIM1_ARATH; Transcription factor BIM1
TrEMBLA0A3Q7GGC30.0A0A3Q7GGC3_SOLLC; Uncharacterized protein
STRINGSolyc03g114720.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA39692345
Representative plantOGRP13601747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08130.42e-87bHLH family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  2. Liang T, et al.
    UVR8 Interacts with BES1 and BIM1 to Regulate Transcription and Photomorphogenesis in Arabidopsis.
    Dev. Cell, 2018. 44(4): p. 512-523.e5
    [PMID:29398622]