PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc03g113560.2.1
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 103aa    MW: 11444.1 Da    PI: 5.6596
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc03g113560.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.60.000263322255
                        HHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH 22 eLrellPkaskapskKlsKaeiLekAveYIksLq 55
                         L++l+P +    +k   Ka +L + ++YI+sLq
  Solyc03g113560.2.1  3 ILQDLVPGC----NKVIGKALVLDEIINYIQSLQ 32
                        699999999....6669****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.864131IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.9E-11250IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-10250IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048446Biological Processpetal morphogenesis
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 103 aa     Download sequence    Send to blast
MKILQDLVPG CNKVIGKALV LDEIINYIQS LQRQVEFLSM KLEAVNSRMN HPIETFPSKD  60
LAPSAFDTSG MIFGTQAPRE YAQGTQSEWL HMQVGNSFDR AT*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.1741e-175flower| fruit| seed
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may regulate jasmonate-regulated genes. {ECO:0000250|UniProtKB:Q69WS3}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc03g113560.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004236164.11e-71transcription factor BHLH089 isoform X3
SwissprotQ84T086e-47BH089_ORYSJ; Transcription factor BHLH089
TrEMBLA0A3Q7GFI98e-70A0A3Q7GFI9_SOLLC; Uncharacterized protein
STRINGSolyc03g113560.2.15e-72(Solanum lycopersicum)
STRINGPGSC0003DMT4000628442e-69(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12872471
Representative plantOGRP5816313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59640.14e-49BIG PETAL P
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  2. Yilmaz A, et al.
    GRASSIUS: a platform for comparative regulatory genomics across the grasses.
    Plant Physiol., 2009. 149(1): p. 171-80
    [PMID:18987217]