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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc03g112890.1.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | MYB | ||||||||
Protein Properties | Length: 346aa MW: 40341.1 Da PI: 6.1952 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.1 | 1.5e-16 | 158 | 204 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT eEd +l+++v+++G + W+ Ia+ + gR +kqc++rw+++l Solyc03g112890.1.1 158 KGQWTIEEDRILINLVERFGDRKWSQIAQVLK-GRIGKQCRERWHNHL 204 799****************************9.*************97 PP | |||||||
2 | Myb_DNA-binding | 51.8 | 1.8e-16 | 212 | 252 | 3 | 45 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 WT+eEd +l++a+ + G++ W+ Ia+++ gRt++++k++w+ Solyc03g112890.1.1 212 LWTEEEDMILIKAHSEIGNK-WAEIAKKLA-GRTENSIKNHWN 252 6*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 27.783 | 153 | 208 | IPR017930 | Myb domain |
SMART | SM00717 | 6.3E-14 | 157 | 206 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.35E-30 | 157 | 251 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.3E-15 | 158 | 204 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.6E-27 | 159 | 211 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.68E-13 | 161 | 204 | No hit | No description |
SMART | SM00717 | 5.8E-16 | 209 | 257 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 20.11 | 209 | 259 | IPR017930 | Myb domain |
Pfam | PF00249 | 8.3E-15 | 212 | 252 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.3E-22 | 212 | 258 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.71E-12 | 213 | 255 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010183 | Biological Process | pollen tube guidance | ||||
GO:0045697 | Biological Process | regulation of synergid differentiation | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 346 aa Download sequence Send to blast |
MEFDNQDVFC TPPKDYLQEF RHLDQNFMID MNNGYDPLFD PLSNHDDNFS SIGQDFNFGY 60 EFKPFDQNGS ASGSTLIMKN FESSMDSMNY NFMCNQDMKP INFNVVPDES SSCVSNNIDI 120 NGSKDKEIDG KNKKQILFSS SSMRKIGRVT RNKSKSVKGQ WTIEEDRILI NLVERFGDRK 180 WSQIAQVLKG RIGKQCRERW HNHLRPDIKK DLWTEEEDMI LIKAHSEIGN KWAEIAKKLA 240 GRTENSIKNH WNATKRRQFS RRKCRTKWPR PSSILQNYIK SLNFEKSNNN NNNAGKSTVE 300 EVPTFSDEFG LDKKLFDDLE IPYELMQDGE VNHKDLDLMD FDYSE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1mse_C | 3e-43 | 157 | 258 | 3 | 104 | C-Myb DNA-Binding Domain |
1msf_C | 3e-43 | 157 | 258 | 3 | 104 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00442 | DAP | Transfer from AT4G18770 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc03g112890.1.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU124737 | 0.0 | Solanum lycopersicum chromosome 3 clone C03HBa0054O21, complete sequence |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004236532.2 | 0.0 | transcription factor MYB98-like | ||||
TrEMBL | K4BKE2 | 0.0 | K4BKE2_SOLLC; Uncharacterized protein | ||||
STRING | Solyc03g112890.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3150 | 23 | 49 |
Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18770.1 | 1e-68 | myb domain protein 98 |
Link Out ? help Back to Top | |
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Phytozome | Solyc03g112890.1.1 |
Publications ? help Back to Top | |||
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