PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

MYB

Protein Properties

Length: 326aa MW: 37140.3 Da PI: 6.6003

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc03g112390.2.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	50.3	5.7e-16	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEde+l ++++ +G g+W+++++ g+ R++k+c++rw +yl Solyc03g112390.2.1 14 KGLWSPEEDEKLSNYITNFGIGSWSSVPKLAGLQRCGKSCRLRWINYL 61 678*******************************************97 PP
2	Myb_DNA-binding	46.7	7.5e-15	67	110	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg ++++E+++++ +++ lG++ W+ Ia+ ++ gRt++++k++w++ Solyc03g112390.2.1 67 RGMFSQDEEDKIISLHQVLGNR-WAQIAAQLP-GRTDNEIKNFWNS 110 788*****************.*****.*********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	4.2E-24	6	64	IPR009057	Homeodomain-like
PROSITE profile	PS51294	16.23	9	61	IPR017930	Myb domain
SuperFamily	SSF46689	1.01E-28	12	108	IPR009057	Homeodomain-like
SMART	SM00717	1.1E-9	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	2.7E-13	14	61	IPR001005	SANT/Myb domain
CDD	cd00167	1.86E-8	17	61	No hit	No description
PROSITE profile	PS51294	23.611	62	116	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.5E-25	65	116	IPR009057	Homeodomain-like
SMART	SM00717	2.5E-13	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	9.8E-14	67	110	IPR001005	SANT/Myb domain
CDD	cd00167	1.51E-9	70	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 326 aa Download sequence Send to blast
MGRHSCSVKQ KLRKGLWSPE EDEKLSNYIT NFGIGSWSSV PKLAGLQRCG KSCRLRWINY 60 LRPDLKRGMF SQDEEDKIIS LHQVLGNRWA QIAAQLPGRT DNEIKNFWNS SLKKKLMKQG 120 IDPNTHKPLK ENQIIKDEEN CTNKTSMLQI PPHLNEMGNG QFTDSKQVFD LLFVHDFQSN 180 TNPREYNSQV LAQYHDHQGE FENHQNYVFC SGSSVTKLEH VQMTETDFGS SSTSRMSSSN 240 SSNMCSNQNT AGIQINGMSE NSEALSWDIE NKMESLFQYP YIGIKNEESK SSPSQERDQL 300 YGNTTSGDFM SNYPLSSLTE EFKWG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	7e-28	12	116	5	108	B-MYB
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc03g112390.2.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC244804	5e-16	Solanum lycopersicum strain Heinz 1706 chromosome 10 clone hba-74b18 map 10, complete sequence

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004236253.1	0.0	myb-related protein 315-like isoform X1
TrEMBL	A0A3Q7FS33	0.0	A0A3Q7FS33_SOLLC; Uncharacterized protein
STRING	Solyc03g112390.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12	24	2154
Representative plant	OGRP5	17	1784

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G26660.1	1e-77	myb domain protein 86

Link Out ? help Back to Top
Phytozome	Solyc03g112390.2.1
Entrez Gene	101264810

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]