PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc03g111450.1.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | NF-YC | ||||||||
Protein Properties | Length: 319aa MW: 35307.2 Da PI: 4.4384 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 135.9 | 1.1e-42 | 81 | 184 | 1 | 101 |
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdi 88 q++ fw+ q ie++ dfk+h++P++rik+i+k++++ ++sae+P+l+skacelf+leltlrsw ha++n+r +lkk+d aaa+ rt++ Solyc03g111450.1.1 81 QMRIFWNCQreeIEEMDDFKHHHFPISRIKRIIKSENNAIKLSAETPILFSKACELFVLELTLRSWFHAQQNNRGSLKKTDFAAAIRRTEV 171 79*****997779999*************************************************************************** PP NF-YC 89 fdflvdivprdel 101 fdfl d+vp+de+ Solyc03g111450.1.1 172 FDFLADVVPEDEI 184 **********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 2.35E-22 | 90 | 190 | IPR009072 | Histone-fold |
Pfam | PF00808 | 2.1E-11 | 104 | 166 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 1.3E-26 | 104 | 181 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 319 aa Download sequence Send to blast |
MENNDQQPME INQQQPMENN DQQAMEINQQ QPMENNDQQP MEINQQQPVE PLYPGYPFYQ 60 MLLHQQHQQL QLQLQQQVEE QMRIFWNCQR EEIEEMDDFK HHHFPISRIK RIIKSENNAI 120 KLSAETPILF SKACELFVLE LTLRSWFHAQ QNNRGSLKKT DFAAAIRRTE VFDFLADVVP 180 EDEINEVATG FGPGMVGPTV GGGFPYFYPP MGLLAMPGVM PGGPAMLGVM PGGPAMLGPM 240 PGGPAMPGPM IGGPSMPGPM IGGPAVAVVA PSVYVQPPLQ AWQPAGDNPN AGGESDGQGG 300 IFLLFLRSDE GNVFRRRV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 8e-34 | 89 | 180 | 3 | 94 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc03g111450.1.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006351461.1 | 1e-130 | PREDICTED: nuclear transcription factor Y subunit C-1-like | ||||
TrEMBL | A0A3Q7FQY4 | 1e-177 | A0A3Q7FQY4_SOLLC; Uncharacterized protein | ||||
STRING | Solyc03g111450.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA20820 | 3 | 3 | Representative plant | OGRP315 | 17 | 117 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G48590.1 | 9e-43 | nuclear factor Y, subunit C1 |
Link Out ? help Back to Top | |
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Phytozome | Solyc03g111450.1.1 |
Publications ? help Back to Top | |||
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