|
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Solyc03g110850.1.1 |
Common Name | LOC101265223 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
|
Family |
NF-YC |
Protein Properties |
Length: 164aa MW: 18914.6 Da PI: 5.1002 |
Description |
NF-YC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Solyc03g110850.1.1 | genome | ITAG | View CDS |
|
Signature Domain? help Back to Top |
|
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | NF-YC | 119.5 | 1.5e-37 | 33 | 132 | 2 | 97 |
NF-YC 2 lksfwekq...iekatdfknhelP.larikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdi 88
l++fw+++ +e++ dfk + lP + rikki+k+d+dv+mi++e+Pvll+kacelfi eltlrsw +aeen+rr lkk d+++++ +td+
Solyc03g110850.1.1 33 LEMFWTDKrreMENVIDFKSNLLPrIHRIKKIMKTDKDVRMIATESPVLLAKACELFIQELTLRSWFKAEENHRRILKKDDVTDVIMETDT 123
899**988788************9899**************************************************************** PP
NF-YC 89 fdflvdivp 97
dfl+d+
Solyc03g110850.1.1 124 LDFLLDDDA 132
*****9865 PP
|
Sequence ? help Back to Top |
Protein Sequence Length: 164 aa
Download sequence Send
to blast |
MENNYEKSAV NAGQSAAYPM LSPPHLEKKQ EKLEMFWTDK RREMENVIDF KSNLLPRIHR 60 IKKIMKTDKD VRMIATESPV LLAKACELFI QELTLRSWFK AEENHRRILK KDDVTDVIME 120 TDTLDFLLDD DANVTDGSTQ NVVPFYVAEG TMGVHTDNLD HQM*
|
Expression --
Description ? help
Back to Top |
Source |
Description |
Uniprot | TISSUE SPECIFICITY: Ubiquitous. Present in etiolated seedlings. {ECO:0000269|PubMed:11250072, ECO:0000269|PubMed:17322342, ECO:0000269|PubMed:9662544}. |
Functional Description ? help
Back to Top |
Source |
Description |
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Publications
? help Back to Top |
- Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505] - Shi H,Chan ZL
AtHAP5A modulates freezing stress resistance in Arabidopsis independent of the CBF pathway. Plant Signal Behav, 2015. [PMID:24831307] - Shi H,Chan ZL
AtHAP5A modulates freezing stress resistance in Arabidopsis independent of the CBF pathway. Plant Signal Behav, 2014. 9(7): p. e29109 [PMID:25763489] - Tang Y, et al.
Arabidopsis NF-YCs Mediate the Light-Controlled Hypocotyl Elongation via Modulating Histone Acetylation. Mol Plant, 2017. 10(2): p. 260-273 [PMID:27876642] - Zhao H, et al.
The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]
|