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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Solyc03g110840.1.1 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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| Family |
NF-YC |
| Protein Properties |
Length: 163aa MW: 18373.8 Da PI: 5.2969 |
| Description |
NF-YC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Solyc03g110840.1.1 | genome | ITAG | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NF-YC | 123.2 | 1.1e-38 | 32 | 133 | 2 | 99 |
NF-YC 2 lksfwekq...iekatdfknh.elPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdi 88
l++fw++q +e+ +dfk++ lP +rikki+k++edv+m++ e+Pvll+kacelfi +ltlrs +ha+en+rr lkk d+++++ +td
Solyc03g110840.1.1 32 LEMFWKSQqsqMENIKDFKDRlLLPPTRIKKIMKKNEDVRMVAGESPVLLAKACELFIQDLTLRSSIHAQENHRRILKKDDLTDVIVQTDY 122
789**9887889*******66268******************************************************************* PP
NF-YC 89 fdflvdivprd 99
fdfl+d+v r+
Solyc03g110840.1.1 123 FDFLLDVVHRN 133
********986 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 163 aa
Download sequence Send
to blast |
MSELSNVEKT TMKNNSEKSI VNAAQSTGYP TLEMFWKSQQ SQMENIKDFK DRLLLPPTRI 60
KKIMKKNEDV RMVAGESPVL LAKACELFIQ DLTLRSSIHA QENHRRILKK DDLTDVIVQT 120
DYFDFLLDVV HRNGATDPFT PNSVPLYAAG GSNEEDGNNL DQ*
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Ubiquitous. Present in etiolated seedlings. {ECO:0000269|PubMed:11250072, ECO:0000269|PubMed:17322342}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters (By similarity). Involved in the abscisic acid (ABA) signaling pathway. {ECO:0000250, ECO:0000269|PubMed:17322342}. |
| Publications
? help Back to Top |
- Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
Theor. Appl. Genet., 2005. 112(1): p. 72-84
[PMID:16208505] - Hwang YH, et al.
Functional conservation of rice OsNF-YB/YC and Arabidopsis AtNF-YB/YC proteins in the regulation of flowering time.
Plant Cell Rep., 2016. 35(4): p. 857-65
[PMID:26754793] - Liu X, et al.
The NF-YC-RGL2 module integrates GA and ABA signalling to regulate seed germination in Arabidopsis.
Nat Commun, 2016. 7: p. 12768
[PMID:27624486] - Myers ZA, et al.
NUCLEAR FACTOR Y, Subunit C (NF-YC) Transcription Factors Are Positive Regulators of Photomorphogenesis in Arabidopsis thaliana.
PLoS Genet., 2016. 12(9): p. e1006333
[PMID:27685091] - Tang Y, et al.
Arabidopsis NF-YCs Mediate the Light-Controlled Hypocotyl Elongation via Modulating Histone Acetylation.
Mol Plant, 2017. 10(2): p. 260-273
[PMID:27876642] - Zhao H, et al.
The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
Front Plant Sci, 2016. 7: p. 2045
[PMID:28119722] - Qi M, et al.
QQS orphan gene and its interactor NF-YC4 reduce susceptibility to pathogens and pests.
Plant Biotechnol. J., 2019. 17(1): p. 252-263
[PMID:29878511]
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