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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc03g098260.1.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | MYB_related | ||||||||
Protein Properties | Length: 42aa MW: 4769.4 Da PI: 9.4063 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 42 | 2.1e-13 | 4 | 40 | 1 | 38 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlk 38 rg W + Ede+l ++v+++G+++W++Ia ++ gR++ Solyc03g098260.1.1 4 RGHWRPHEDEKLRELVAKYGPHNWNAIALNLQ-GRSGL 40 899*****************************.**986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 18.506 | 1 | 41 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.1E-13 | 3 | 40 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.36E-10 | 3 | 41 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 3.1E-12 | 4 | 41 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.13E-9 | 7 | 41 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 42 aa Download sequence Send to blast |
MCSRGHWRPH EDEKLRELVA KYGPHNWNAI ALNLQGRSGL Q* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: In elongating stem internodes, expressed in developing protoxylem and elongating interfascicular fiber cells. In non-elongating internodes, expressed in developing metaxylem cells and interfascicular fibers. In roots, expressed in developing secondary xylem. {ECO:0000269|PubMed:18952777}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that regulates secondary cell wall (SCW) biosynthesis, especially in interfascicular and xylary fibers. {ECO:0000269|PubMed:18952777}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc03g098260.1.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006364392.1 | 1e-21 | PREDICTED: transcriptional activator Myb-like isoform X1 | ||||
Refseq | XP_006364393.1 | 1e-21 | PREDICTED: transcriptional activator Myb-like isoform X2 | ||||
Refseq | XP_010318340.1 | 1e-21 | transcription factor MYB54-like | ||||
Refseq | XP_015069302.1 | 1e-21 | transcription factor MYB54-like isoform X1 | ||||
Refseq | XP_015069303.1 | 1e-21 | transcription factor MYB54-like isoform X2 | ||||
Swissprot | Q9FX36 | 2e-17 | MYB54_ARATH; Transcription factor MYB54 | ||||
TrEMBL | A0A3Q7FNT7 | 3e-21 | A0A3Q7FNT7_SOLLC; Uncharacterized protein | ||||
TrEMBL | M1D2B8 | 2e-20 | M1D2B8_SOLTU; Uncharacterized protein | ||||
STRING | Solyc03g098260.1.1 | 2e-23 | (Solanum lycopersicum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G73410.1 | 7e-20 | myb domain protein 54 |
Link Out ? help Back to Top | |
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Phytozome | Solyc03g098260.1.1 |
Publications ? help Back to Top | |||
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