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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Solyc03g097650.2.1 |
| Common Name | LOC101262704 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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| Family |
NAC |
| Protein Properties |
Length: 257aa MW: 29326 Da PI: 8.201 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Solyc03g097650.2.1 | genome | ITAG | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 142.3 | 2.9e-44 | 14 | 139 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91
lppGfrF+Ptdee+v +yL +k+ + +l++ ++i+e++i+k +Pw+Lp v e++ yfFs+++ ky++g+r+nrat gyWk +g dk+
Solyc03g097650.2.1 14 LPPGFRFQPTDEEIVFQYLIRKTFSCPLPA-SIIPEINICKNDPWNLPGDV---EQDRYFFSNKEAKYRNGNRANRATIGGYWKPSGLDKQ 100
79****************************.89***************554...5689********************************* PP
NAM 92 vlsk.kgelvglkktLvfykg.rapkgektdWvmheyrl 128
++++ ++ vg+kktLvfykg +a+++ +tdW+mheyrl
Solyc03g097650.2.1 101 IICSkRKPIVGMKKTLVFYKGkSASQAYRTDWIMHEYRL 139
999745556**********995678889*********98 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 257 aa
Download sequence Send
to blast |
MDKFNFVKDG AIKLPPGFRF QPTDEEIVFQ YLIRKTFSCP LPASIIPEIN ICKNDPWNLP 60
GDVEQDRYFF SNKEAKYRNG NRANRATIGG YWKPSGLDKQ IICSKRKPIV GMKKTLVFYK 120
GKSASQAYRT DWIMHEYRLV LPKNSSSNLH VHFNKSSSQQ NNSLVQIGNW VLCHIFLKKR 180
NGKCDEEIIE ANCHDDNYKA NDEHNDVVYY DFMREDNLSD SRAAASSCSS SLSINNDDAN 240
EVSSCPTSLL QHQQPL*
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| 3D Structure ? help Back to Top |
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| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 3e-39 | 12 | 183 | 15 | 170 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 3e-39 | 12 | 183 | 15 | 170 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 3e-39 | 12 | 183 | 15 | 170 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 3e-39 | 12 | 183 | 15 | 170 | NO APICAL MERISTEM PROTEIN |
| 4dul_A | 3e-39 | 12 | 183 | 15 | 170 | NAC domain-containing protein 19 |
| 4dul_B | 3e-39 | 12 | 183 | 15 | 170 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: Up-regulated during xylem vessel element differentiation. {ECO:0000269|PubMed:20388856}. |
| Uniprot | TISSUE SPECIFICITY: Expressed in xylem and phloem cells in roots and inflorescence stems (PubMed:20388856). Highly expressed in senescent leaves. Expressed in roots, and abscission and dehiscence tissues, such as axils of bracts and abscission zones in cauline leaves and siliques (PubMed:21673078). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078, ECO:0000269|PubMed:24442717}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269|PubMed:21673078}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AC232776 | 3e-07 | Solanum lycopersicum chromosome 2 clone C02SLm0132H19, complete sequence |
