PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc03g095980.2.1
Common NameLOC101256462
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 210aa    MW: 23867.1 Da    PI: 6.8937
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc03g095980.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.65.3e-143480354
                        HHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                 HLH  3 rahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                        r+h+e+E+rRRdriN  +++Lr+l+P+        K++Ka+ L  +v+++k+L
  Solyc03g095980.2.1 34 RSHSEAEKRRRDRINAQLSTLRKLIPTwE------KMDKAALLGSVVDHVKDL 80
                        78*************************55......****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.24E-102983No hitNo description
PROSITE profilePS5088816.1263180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-143391IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-113480IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.5E-153483IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-123786IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF550218.24E-5119185No hitNo description
Gene3DG3DSA:3.30.70.2605.8E-5119183No hitNo description
CDDcd048732.03E-6119181No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MENSFSSEYC DVNDFLVQNY LPQCSHEGRE SASRSHSEAE KRRRDRINAQ LSTLRKLIPT  60
WEKMDKAALL GSVVDHVKDL KDKTAEISNV LNTPTDTDEV SIEHLNEEED NKGCLIKASF  120
CCDDRPELFS ELQRGIKNLQ LRMMEADITS LGGRIKCVFM LSPNDNYVCI NSLEKSLKAV  180
LSRIAISPST SNYRIKSKRQ RFFLPPQFS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1195200KSKRQR
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc03g095980.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC1583105e-09Solanum lycopersicum AFLP fragment TGT3, mRNA sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004235454.11e-155transcription factor bHLH51
TrEMBLA0A3Q7GBV51e-153A0A3Q7GBV5_SOLLC; Uncharacterized protein
STRINGSolyc03g095980.2.11e-154(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA58202235
Representative plantOGRP37715106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40200.11e-37bHLH family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]