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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc03g095270.1.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | C2H2 | ||||||||
Protein Properties | Length: 239aa MW: 27491.2 Da PI: 7.5367 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.7 | 2.1e-05 | 16 | 38 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C C+++F+++ L H+ +H Solyc03g095270.1.1 16 YRCRFCNEVFTTSQGLAGHQTKH 38 9*******************999 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.0E-5 | 13 | 43 | No hit | No description |
SMART | SM00355 | 0.0079 | 16 | 38 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.575 | 16 | 43 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 18 | 38 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence Send to blast |
MIYPSLLTRP AGSWCYRCRF CNEVFTTSQG LAGHQTKHRF EESWIKGAHH HKFFCPSADL 60 PLHCRYLGYL MPNPVVIHNQ EHLRHQHLRN PVVQSPQISL SDRRSIFDPL QQSVVSEIPP 120 QPQGHPQHGY LQMLQKHIMN QVNQQRAHQL PHGNKEQIPH VNAHEPITPT LNQNNIYAQH 180 LSQWDQFKIQ VMNGALAAKP LELTHSSIGS TSEVTTGWMC EKKNEDHEVE ELDLELRL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc03g095270.1.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A3Q7FP26 | 1e-178 | A0A3Q7FP26_SOLLC; Uncharacterized protein | ||||
STRING | Solyc03g095270.1.1 | 1e-178 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6643 | 8 | 21 |
Link Out ? help Back to Top | |
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Phytozome | Solyc03g095270.1.1 |
Publications ? help Back to Top | |||
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