PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

MYB

Protein Properties

Length: 218aa MW: 25274.9 Da PI: 9.7455

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc03g093940.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	51.9	1.7e-16	9	56	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd++l+d+v ++G +W++ ++ g+ Rt+k+c++rw +yl Solyc03g093940.1.1 9 KGAWSPEEDQKLKDYVMRFGIWNWNLMPKFAGLSRTGKSCRLRWMNYL 56 79****************99**********************97 PP
2	Myb_DNA-binding	47.7	3.5e-15	62	107	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++ eE e+ ++ +qlG++ W++Ia +++ gRt++++k++++++l Solyc03g093940.1.1 62 RGPFSMEERERVIKMYQQLGNR-WAAIAGELP-GRTDNEVKNFFHTHL 107 89******************.*****.**********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	13.928	1	56	IPR017930	Myb domain
SMART	SM00717	1.2E-12	8	58	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	7.76E-29	8	103	IPR009057	Homeodomain-like
Pfam	PF00249	1.3E-14	9	56	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.3E-22	10	63	IPR009057	Homeodomain-like
CDD	cd00167	2.36E-9	11	56	No hit	No description
PROSITE profile	PS51294	21.563	57	111	IPR017930	Myb domain
SMART	SM00717	4.7E-13	61	109	IPR001005	SANT/Myb domain
Pfam	PF00249	7.2E-13	62	107	IPR001005	SANT/Myb domain
CDD	cd00167	4.20E-8	64	107	No hit	No description
Gene3D	G3DSA:1.10.10.60	5.8E-24	64	111	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 218 aa Download sequence Send to blast
MEDIIIIKKG AWSPEEDQKL KDYVMRFGIW NWNLMPKFAG LSRTGKSCRL RWMNYLRPDV 60 KRGPFSMEER ERVIKMYQQL GNRWAAIAGE LPGRTDNEVK NFFHTHLKKN LGQINNIDAP 120 VQCRRVKKQK KKAQEKPKLF VDISSPTMGS SSSISSIITF DQNEKIDMEK TVILESNPSL 180 SSSHSNIDGF DQFVDTTSFW LHLLNHANRE ELYYENS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	3e-24	9	111	7	108	B-MYB
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Fades out in old roots and leaves. {ECO:0000269\|PubMed:24415840}.
Uniprot	TISSUE SPECIFICITY: Expressed in imbibed seeds, hypocotyls, cotyledons, roots, seedlings, siliques and flowers. {ECO:0000269\|PubMed:24415840}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that regulates freezing tolerance by affecting expression of CBF genes. {ECO:0000269\|PubMed:24415840}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc03g093940.1.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by salicylic acid (SA), jasmonic acid (JA), salt (NaCl), ethylene and auxin (IAA) (PubMed:16463103). Down-regulated by cold treatment (PubMed:24415840). {ECO:0000269\|PubMed:16463103, ECO:0000269\|PubMed:24415840}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC215353	5e-06	Solanum lycopersicum chromosome 2 clone C02HBa0011A02, complete sequence
GenBank	AC215465	5e-06	Solanum lycopersicum chromosome 2 clone C02SLe0123B22, complete sequence
GenBank	AC215853	5e-06	Solanum lycopersicum chromosome 2 clone C02HBa0031A13, complete sequence

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004235435.1	1e-163	transcription factor MYB4-like
Swissprot	Q9SJX8	2e-45	MYB14_ARATH; Transcription factor MYB14
TrEMBL	A0A3Q7GB60	1e-161	A0A3Q7GB60_SOLLC; Uncharacterized protein
STRING	Solyc03g093940.1.1	1e-162	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12	24	2154
Representative plant	OGRP5	17	1784

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31180.1	2e-46	myb domain protein 14

Link Out ? help Back to Top
Phytozome	Solyc03g093940.1.1
Entrez Gene	101247304

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505] Chen Y, et al. AtMYB14 Regulates Cold Tolerance in Arabidopsis. Plant Mol. Biol. Rep., 2013. 31: p. 87-97 [PMID:24415840]