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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Solyc03g093930.2.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
|
| Family |
MYB |
| Protein Properties |
Length: 246aa MW: 28529.7 Da PI: 8.3728 |
| Description |
MYB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Solyc03g093930.2.1 | genome | ITAG | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 47.6 | 3.7e-15 | 16 | 63 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g+W++eEd++l+ ++ ++G +W+ ++ g+ Rt+k+c++rw +yl
Solyc03g093930.2.1 16 KGAWSPEEDQKLKSYIMKFGIWNWSHMPKFAGLSRTGKSCRLRWMNYL 63
79******************99************************97 PP
|
| 2 | Myb_DNA-binding | 43.7 | 6.2e-14 | 69 | 114 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
rg++T eE e+ ++ ++lG++ W++Ia +++ gRt++++k++++++l
Solyc03g093930.2.1 69 RGPFTMEEVEIVIKTYQELGNR-WSAIAGRLP-GRTDNEIKNFFHTHL 114
89********************.*********.************986 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 246 aa
Download sequence Send
to blast |
MPRVQLHQQQ STNMKKGAWS PEEDQKLKSY IMKFGIWNWS HMPKFAGLSR TGKSCRLRWM 60
NYLRPDVKRG PFTMEEVEIV IKTYQELGNR WSAIAGRLPG RTDNEIKNFF HTHLKKQLGL 120
KNVGSMKRTK RVVMKKDKDQ NEMTNIYADK SSTNVCNFSS EGINANIITW EENEMRDIVC 180
SNNIVVDDME IKEPVILESN PEIEKNSNVG CHLCQFEYPH PCALSGLDFF HQFDVLWDAQ 240
HLAIF*
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: Fades out in old roots and leaves. {ECO:0000269|PubMed:24415840}. |
| Uniprot | TISSUE SPECIFICITY: Expressed in imbibed seeds, hypocotyls, cotyledons, roots, seedlings, siliques and flowers. {ECO:0000269|PubMed:24415840}. |
| Uniprot | TISSUE SPECIFICITY: Expressed in roots, leaves, stems and flowers (PubMed:17015446, PubMed:19161942). Expressed in stomatal guard cells (PubMed:19161942). {ECO:0000269|PubMed:17015446, ECO:0000269|PubMed:19161942}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription activator that regulates freezing tolerance by affecting expression of CBF genes. {ECO:0000269|PubMed:24415840}. |
| UniProt | Transcription factor involved in cold-regulation of CBF genes and in the development of freezing tolerance. May be part of a complex network of transcription factors controlling the expression of CBF genes and other genes in response to cold stress. Binds to the MYB recognition sequences in the promoters of CBF1, CBF2 and CBF3 genes (PubMed:17015446). Involved in drought and salt tolerance. May enhance expression levels of genes involved in abscisic acid (ABA) biosynthesis and signaling, as well as those encoding stress-protective proteins (PubMed:19161942). {ECO:0000269|PubMed:17015446, ECO:0000269|PubMed:19161942}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Induced by abscisic acid (ABA) and drought stress (PubMed:19161942). Induced by salt stress (PubMed:19161942). {ECO:0000269|PubMed:19161942}. |
| UniProt | INDUCTION: Induced by salicylic acid (SA), jasmonic acid (JA), salt (NaCl), ethylene and auxin (IAA) (PubMed:16463103). Down-regulated by cold treatment (PubMed:24415840). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:24415840}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AY131230 | 1e-12 | Lycopersicon esculentum MYB transcription factor (MYB) mRNA, MYB-1 allele, partial cds |
| GenBank | AY131231 | 1e-12 | Lycopersicon esculentum MYB transcription factor (MYB) mRNA, MYB-2 allele, partial cds |
| GenBank | X98308 | 1e-12 | L.esculentum mRNA for myb-related protein |
| Publications
? help Back to Top |
- Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
Theor. Appl. Genet., 2005. 112(1): p. 72-84
[PMID:16208505] - Schnaubelt D, et al.
Low glutathione regulates gene expression and the redox potentials of the nucleus and cytosol in Arabidopsis thaliana.
Plant Cell Environ., 2015. 38(2): p. 266-79
[PMID:24329757] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
BMC Plant Biol., 2013. 13: p. 229
[PMID:24377444] - Chen Y, et al.
AtMYB14 Regulates Cold Tolerance in Arabidopsis.
Plant Mol. Biol. Rep., 2013. 31: p. 87-97
[PMID:24415840] - Ma X, et al.
CYCLIN-DEPENDENT KINASE G2 regulates salinity stress response and salt mediated flowering in Arabidopsis thaliana.
Plant Mol. Biol., 2015. 88(3): p. 287-99
[PMID:25948280] - Kim SH, et al.
Phosphorylation of the transcriptional repressor MYB15 by mitogen-activated protein kinase 6 is required for freezing tolerance in Arabidopsis.
Nucleic Acids Res., 2017. 45(11): p. 6613-6627
[PMID:28510716] - Chezem WR,Memon A,Li FS,Weng JK,Clay NK
SG2-Type R2R3-MYB Transcription Factor MYB15 Controls Defense-Induced Lignification and Basal Immunity in Arabidopsis.
Plant Cell, 2017. 29(8): p. 1907-1926
[PMID:28733420] - Pal S, et al.
TransDetect Identifies a New Regulatory Module Controlling Phosphate Accumulation.
Plant Physiol., 2017. 175(2): p. 916-926
[PMID:28827455]
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