PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc03g093530.1.1
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 119aa    MW: 13197.7 Da    PI: 9.0291
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc03g093530.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.64.8e-1672114247
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaai 47 
                         +y+GVr+++ +g+++AeIrdp++ g   r++lg++ t  +Aa+a++
  Solyc03g093530.1.1  72 QYRGVRRRP-WGKYAAEIRDPTWKG--SRVWLGTYETDVDAARAYD 114
                         7********.**********99965..**********99******9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.11E-2071118No hitNo description
Gene3DG3DSA:3.30.730.107.8E-2371117IPR001471AP2/ERF domain
PfamPF008471.8E-972115IPR001471AP2/ERF domain
PROSITE profilePS5103219.98172118IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-1672117IPR016177DNA-binding domain
SMARTSM003801.6E-1372118IPR001471AP2/ERF domain
PRINTSPR003676.4E-107384IPR001471AP2/ERF domain
PRINTSPR003676.4E-1096112IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 119 aa     Download sequence    Send to blast
MISKEEEKLT LQLIREHLLG DSFIHYHPIP RVNTSDGHSS IPTTSSVGSN PDRKFSGSGN  60
GSSPADEGTK KQYRGVRRRP WGKYAAEIRD PTWKGSRVWL GTYETDVDAA RAYDCVAF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-1871118451ATERF1
3gcc_A1e-1871118451ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc03g093530.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2130082e-07Solanum lycopersicum chromosome 12 clone LE_HBa-144B17, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015069273.16e-65ethylene-responsive transcription factor ERF106-like
TrEMBLA0A3Q7FNR77e-45A0A3Q7FNR7_SOLLC; Uncharacterized protein
STRINGSolyc03g093530.1.11e-83(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07580.11e-25ERF family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]