PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc03g083310.2.1
Common NameLOC101256661
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C2H2
Protein Properties Length: 383aa    MW: 43622.2 Da    PI: 6.9941
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc03g083310.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.30.0005280102323
                         ET..TTTEEESSHHHHHHHHHHT CS
             zf-C2H2   3 Cp..dCgksFsrksnLkrHirtH 23 
                         C+   Cgk+F +   L++H   H
  Solyc03g083310.2.1  80 CSyeGCGKTFIDAGALRKHSHIH 102
                         77779**************7766 PP
2zf-C2H216.42.5e-05107131123
                         EEET..TTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                         y+C+   Cgk F ++s LkrH   H
  Solyc03g083310.2.1 107 YVCHyeGCGKKFLDSSKLKRHFLIH 131
                         9********************8877 PP
3zf-C2H222.33.4e-07137161123
                         EEET..TTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                         y+Cp   Cgk Fs   nL++H++tH
  Solyc03g083310.2.1 137 YVCPheGCGKAFSLDFNLRSHMKTH 161
                         99**********************9 PP
4zf-C2H216.32.8e-05167192123
                         EEET..TTTEEESSHHHHHHHHHH.T CS
             zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                         + Cp   Cgk++ + + Lk+Hi++ H
  Solyc03g083310.2.1 167 HICPypECGKRYAHEYKLKNHISStH 192
                         679999****************9988 PP
5zf-C2H216.13.2e-05240265123
                         EEET..TTTEEESSHHHHHHHHHH.T CS
             zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                         y+Cp   C+ks+ + + L+ H+r+ H
  Solyc03g083310.2.1 240 YSCPyeGCDKSYIHEYKLNLHLRNmH 265
                         99*********************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.609.5E-1473104IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.78378107IPR007087Zinc finger, C2H2
SMARTSM003550.003278102IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028080102IPR007087Zinc finger, C2H2
SuperFamilySSF576673.25E-881131No hitNo description
Gene3DG3DSA:3.30.160.602.4E-14105127IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015713.921107136IPR007087Zinc finger, C2H2
SMARTSM003550.0024107131IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280109131IPR007087Zinc finger, C2H2
SuperFamilySSF576672.87E-14118170No hitNo description
Gene3DG3DSA:3.30.160.602.2E-20128162IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.882137166IPR007087Zinc finger, C2H2
SMARTSM003551.7E-4137161IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280139161IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.5E-7163193IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.847167197IPR007087Zinc finger, C2H2
SMARTSM003550.031167192IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280169192IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.3E-8234262IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.99E-5235270No hitNo description
PROSITE profilePS5015711.344240270IPR007087Zinc finger, C2H2
SMARTSM003558.2E-4240265IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280242265IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
METHMSHHHQ YERRPIYKSK APASKWFKEW VPQDVVATGG KCYVLKWVNE ATLKALREKP  60
KEAGVPVSEP EPTTEVLFLC SYEGCGKTFI DAGALRKHSH IHGERQYVCH YEGCGKKFLD  120
SSKLKRHFLI HTGERDYVCP HEGCGKAFSL DFNLRSHMKT HSQENYHICP YPECGKRYAH  180
EYKLKNHISS THQKNNTPDA HAHPHPHAHA PKYTPPVEKP VKTPKSSSAA YGSSSSDRPY  240
SCPYEGCDKS YIHEYKLNLH LRNMHPGHFP EENARNVQST ADNEIDEGSD QDAYAARRGN  300
GRSQKQSRPK PSLKQPPLKV ARKSSSSAAQ ANLIISKKPW PVKEENFNEE DSEETEEERD  360
DVGDGWRYGE NDDDDEETEE DD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ubd_C1e-33801948119PROTEIN (YY1 ZINC FINGER DOMAIN)
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.178620.0flower| fruit| leaf| trichome
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Rapidly induced following seed germination, especially in tender cotyledons. {ECO:0000269|PubMed:26961720}.
UniprotTISSUE SPECIFICITY: Mostly expressed in flowers, to a lower extent in seedlings, stems and leaves, and, at low levels, in roots and senescent leaves. {ECO:0000269|PubMed:26961720}.
Functional Description ? help Back to Top
Source Description
UniProtDual-function transcription factor with both repression and activation activities. Binds to 5'-CCATATT-3' motif in target gene promoters (e.g. ABR1) (PubMed:26961720). Binds also to G-rich DNA motif 5'-GGGGGCAGTGG-3' (PubMed:22508367). Regulates the expression of genes involved in diverse cellular pathways, including glucose metabolism, photosynthesis, phototropism and stress response (e.g. salt, drought and osmotic stress) (PubMed:22508367, PubMed:26961720). Regulates plant immunity, especially during necrotrophic fungal infection (e.g. B.cinerea) (PubMed:24451981). Binds to ABR1 promoter and promotes its expression, thus negatively regulating the abscisic acid (ABA) signaling pathway. Represses ABA- and salt-responsive genes expression (PubMed:26961720). {ECO:0000269|PubMed:22508367, ECO:0000269|PubMed:24451981, ECO:0000269|PubMed:26961720}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc03g083310.2.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in an ABI1- and ABI4-dependent manner. Stimulated by stress conditions including high salt, osmotic stress (e.g. mannitol) and dehydration. May be induced by ABI4 but repressed by ABR1. Repressed by darkness but induced by light. {ECO:0000269|PubMed:26961720}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004234963.10.0zinc finger transcription factor YY1
SwissprotQ2V3L31e-150YY1_ARATH; Zinc finger transcription factor YY1
TrEMBLM1AIE20.0M1AIE2_SOLTU; Uncharacterized protein
STRINGSolyc03g083310.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA73432332
Representative plantOGRP38561626
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06634.11e-138C2H2 family protein
Publications ? help Back to Top
  1. Kumekawa N,Hosouchi T,Tsuruoka H,Kotani H
    The size and sequence organization of the centromeric region of Arabidopsis thaliana chromosome 4.
    DNA Res., 2001. 8(6): p. 285-90
    [PMID:11853315]
  2. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  3. Li T,Wu XY,Li H,Song JH,Liu JY
    A Dual-Function Transcription Factor, AtYY1, Is a Novel Negative Regulator of the Arabidopsis ABA Response Network.
    Mol Plant, 2016. 9(5): p. 650-661
    [PMID:26961720]
  4. Wu XY,Li T
    A Casein Kinase II Phosphorylation Site in AtYY1 Affects Its Activity, Stability, and Function in the ABA Response.
    Front Plant Sci, 2017. 8: p. 323
    [PMID:28348572]