PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

C2H2

Protein Properties

Length: 343aa MW: 38670.2 Da PI: 6.3976

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc03g059270.2.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.2	3e-05	149	168	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp C k+F+r n++ H+ Solyc03g059270.2.1 149 FSCPVCFKTFNRYNNMQMHM 168 89*****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	4.9E-6	149	168	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	9.64	149	176	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	151	171	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 343 aa Download sequence Send to blast
MTDPNFYSQE EEWLKLNNPN IPSPPPNNNN YYYETPPLKE ALPLLSLLSP IKHDDDDDDE 60 GCCSISDLDK KGRRVEHMDD NSCTKDDDED VTVALHIGLP NPSSADLASI NKDDVSIPMA 120 NMINTTSTSS SRQYWIPTPS QILIGPTQFS CPVCFKTFNR YNNMQMHMWG HGSQYRKGPE 180 SLRGTQPTGI KCGKAFAVRG DWRTHEKNCG KLWYCICGSD FKHKRSLKDH IKAFGQGHGP 240 YGIHSFDDDD DDPASEVEQD NPPQHIDIDH TRSSTTALSH KQNHMIWALN MGNTARKVWG 300 KHLHQKCNIC VGLNVQPKTT YLIFTITIYT NINNTLNNLF SS*

Sequence ? help Back to Top

Protein Sequence Length: 343 aa Download sequence Send to blast

MTDPNFYSQE EEWLKLNNPN IPSPPPNNNN YYYETPPLKE ALPLLSLLSP IKHDDDDDDE  60
GCCSISDLDK KGRRVEHMDD NSCTKDDDED VTVALHIGLP NPSSADLASI NKDDVSIPMA  120
NMINTTSTSS SRQYWIPTPS QILIGPTQFS CPVCFKTFNR YNNMQMHMWG HGSQYRKGPE  180
SLRGTQPTGI KCGKAFAVRG DWRTHEKNCG KLWYCICGSD FKHKRSLKDH IKAFGQGHGP  240
YGIHSFDDDD DDPASEVEQD NPPQHIDIDH TRSSTTALSH KQNHMIWALN MGNTARKVWG  300
KHLHQKCNIC VGLNVQPKTT YLIFTITIYT NINNTLNNLF SS*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc03g059270.2.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004234792.3	1e-164	zinc finger protein WIP2
TrEMBL	A0A3Q7FKS7	1e-163	A0A3Q7FKS7_SOLLC; Uncharacterized protein
STRING	Solyc03g059270.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA27141	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57670.1	1e-75	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Solyc03g059270.2.1

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]