PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

MYB

Protein Properties

Length: 264aa MW: 29937.9 Da PI: 7.2342

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc03g059200.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	57.9	2.4e-18	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+eEd +++ +v+ +G g+W++++++ g++R++k+c++rw +yl Solyc03g059200.1.1 14 RGPWTAEEDAKILAYVATHGIGNWTLVPQKAGLNRCGKSCRLRWTNYL 61 89********************************************97 PP
2	Myb_DNA-binding	48.6	1.8e-15	68	110	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +++T++E++ +++++k G++ W++Ia+ ++ gRt++++k++w++ Solyc03g059200.1.1 68 DNFTPQEEDCILELHKTIGSR-WSLIAKQLP-GRTDNDVKNYWNT 110 68*****************.*****.*********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	4.1E-25	5	64	IPR009057	Homeodomain-like
PROSITE profile	PS51294	25.647	9	65	IPR017930	Myb domain
SuperFamily	SSF46689	8.41E-32	11	108	IPR009057	Homeodomain-like
SMART	SM00717	4.5E-15	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	2.0E-16	14	61	IPR001005	SANT/Myb domain
CDD	cd00167	2.79E-12	16	61	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.1E-24	65	117	IPR009057	Homeodomain-like
SMART	SM00717	2.1E-14	66	114	IPR001005	SANT/Myb domain
PROSITE profile	PS51294	18.498	66	116	IPR017930	Myb domain
CDD	cd00167	3.09E-11	69	112	No hit	No description
Pfam	PF00249	2.3E-14	69	110	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048658	Biological Process	anther wall tapetum development
GO:0052545	Biological Process	callose localization
GO:0055046	Biological Process	microgametogenesis
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 264 aa Download sequence Send to blast
MGRPPCCDKA NVKRGPWTAE EDAKILAYVA THGIGNWTLV PQKAGLNRCG KSCRLRWTNY 60 LRPDLKHDNF TPQEEDCILE LHKTIGSRWS LIAKQLPGRT DNDVKNYWNT KLKKKLVNMG 120 IDPVTHKPFA QVFAEYGKIS GLPIQSPTNH IQFFNNNINI FSNETTTPHH PLQQNYSTQI 180 YTRETLQTLC FTEQSHLPSS SSTSWNDDFI LGDPLTPGTF LSNHPVEQPT CSPAMDSFVD 240 TILARDKQML MDFPPLLDVY LDY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	3e-30	14	116	7	108	B-MYB
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: During anther development, first confined to meiocytes, tapetal and middle layer cells. At the microspore stage, mainly expressed in the tapetum and microspores. Later observed in developing pollen grains. {ECO:0000269\|PubMed:18397379, ECO:0000269\|PubMed:21957980}.
Uniprot	TISSUE SPECIFICITY: Inflorescences-specific (PubMed:18397379). Accumulates in anthers, especially in tapetum and meiocytes/microsporocytes and microspores during anther development (PubMed:17666023, PubMed:18397379). {ECO:0000269\|PubMed:17666023, ECO:0000269\|PubMed:18397379}.

Functional Description ? help Back to Top
Source	Description
UniProt	Required for anther development and early tapetal function during microspore maturation (PubMed:18397379, PubMed:21957980). Regulates callose dissolution required for microspores release from the tetrads (PubMed:18397379). {ECO:0000269\|PubMed:18397379, ECO:0000269\|PubMed:21957980}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc03g059200.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC246962	0.0	Solanum lycopersicum chromosome 3 clone FOS0173E02, complete sequence
GenBank	AC247025	0.0	Solanum lycopersicum chromosome 3 clone FOS0173E02, complete sequence

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004234868.1	0.0	transcription factor MYB35
Swissprot	Q9LSI7	1e-81	MYB35_ARATH; Transcription factor MYB35
TrEMBL	A0A3Q7FKM9	0.0	A0A3Q7FKM9_SOLLC; Uncharacterized protein
STRING	Solyc03g059200.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12	24	2154
Representative plant	OGRP5	17	1784

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G28470.1	7e-82	MYB family protein

Link Out ? help Back to Top
Phytozome	Solyc03g059200.1.1
Entrez Gene	101263585

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505] Tsugama D, et al. A putative MYB35 ortholog is a candidate for the sex-determining genes in Asparagus officinalis. Sci Rep, 2017. 7: p. 41497 [PMID:28176806] Lou Y, et al. Positive regulation of AMS by TDF1 and the formation of a TDF1-AMS complex are required for anther development in Arabidopsis thaliana. New Phytol., 2018. 217(1): p. 378-391 [PMID:28940573] Li DD,Xue JS,Zhu J,Yang ZN Gene Regulatory Network for Tapetum Development in Arabidopsis thaliana. Front Plant Sci, 2017. 8: p. 1559 [PMID:28955355]