PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc03g046440.1.1

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

bZIP

Protein Properties

Length: 174aa MW: 20277.6 Da PI: 6.626

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc03g046440.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	41.1	3.8e-13	70	128	5	63
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 ++ rr+++NRe+ArrsR RK++ + eL v L +eN+ L ++l++ +k +++ e+ Solyc03g046440.1.1 70 RKKRRMISNRESARRSRMRKQKHLNELWAQVNCLRNENHLLLNKLNHVSKIHDQVLEEN 128 6789********************************************99998887776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	5.7E-13	66	130	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.346	68	131	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	3.2E-11	70	128	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	3.86E-12	70	119	No hit	No description
Gene3D	G3DSA:1.20.5.170	7.9E-11	70	143	No hit	No description
CDD	cd14702	4.92E-19	71	122	No hit	No description
PROSITE pattern	PS00036	0	73	88	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 174 aa Download sequence Send to blast
MQSTNVTELY YNPAQYNYTP TFHDQSINRI PSPLYHLQIG PPIQQLNSQS TYFNTNNSTC 60 DEIDELINER KKRRMISNRE SARRSRMRKQ KHLNELWAQV NCLRNENHLL LNKLNHVSKI 120 HDQVLEENAQ LKEETAGLRQ IVTNMHLMDG PNYPLKEIQL DDDEPCSGSS QNE*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	69	90	RKKRRMISNRESARRSRMRKQK
2	82	89	RRSRMRKQ

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc03g046440.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019068255.1	1e-127	basic leucine zipper 43-like
TrEMBL	A0A3Q7G6R2	1e-124	A0A3Q7G6R2_SOLLC; Uncharacterized protein
STRING	Solyc03g046440.1.1	1e-126	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA947	24	92
Representative plant	OGRP3104	11	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G30530.1	9e-32	basic leucine-zipper 42

Link Out ? help Back to Top
Phytozome	Solyc03g046440.1.1

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]