PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Cis-element |

Regulation |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

Solyc03g044690.1.1

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

FAR1

Protein Properties

Length: 350aa MW: 40826.6 Da PI: 9.2386

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc03g044690.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	26.6	1.9e-08	88	140	37	90
FAR1 37 kegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 ++g ++++++k+ +++r+r e r+gC a++k k + + wev +++ eH+H++ Solyc03g044690.1.1 88 RKGPKTHNRNKEMTRKRQRLEYRCGCLAHIKFKIS-NVIWEVCEFSDEHSHPMI 140 45556666666799999**************99.9************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.0E-6	85	140	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	6.4E-22	262	343	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 350 aa Download sequence Send to blast
MIYSTFIQSL TKLVIVYSII YSSYFDTYHL KIVIVAHNVN DQKYSTRTHN VSSINKKFVF 60 EIGMKFVSEE YSCNAYNSYD VAKGFEIRKG PKTHNRNKEM TRKRQRLEYR CGCLAHIKFK 120 ISNVIWEVCE FSDEHSHPMI EYNLRHFIQS GRKLTNSTKN ILGSMLDAGI RTKKVVRYLQ 180 YEEGGIENAG FIEQDAHKFV QAHKRNMISS GDAQTLINHF RHLHSEDSKF FYSFQVDEDG 240 RLCNFFWRDS ISRLHYQCFG DVTIFDTTYR TNRYNMICSP FVGVNNHWKN VFFLCAFSCN 300 ETTDSFVCLF QTFLKGMGGK TPKTIFKDQD HAMAAVIRQV FPKHISSIV*

Sequence ? help Back to Top

Protein Sequence Length: 350 aa Download sequence Send to blast

MIYSTFIQSL TKLVIVYSII YSSYFDTYHL KIVIVAHNVN DQKYSTRTHN VSSINKKFVF  60
EIGMKFVSEE YSCNAYNSYD VAKGFEIRKG PKTHNRNKEM TRKRQRLEYR CGCLAHIKFK  120
ISNVIWEVCE FSDEHSHPMI EYNLRHFIQS GRKLTNSTKN ILGSMLDAGI RTKKVVRYLQ  180
YEEGGIENAG FIEQDAHKFV QAHKRNMISS GDAQTLINHF RHLHSEDSKF FYSFQVDEDG  240
RLCNFFWRDS ISRLHYQCFG DVTIFDTTYR TNRYNMICSP FVGVNNHWKN VFFLCAFSCN  300
ETTDSFVCLF QTFLKGMGGK TPKTIFKDQD HAMAAVIRQV FPKHISSIV*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc03g044690.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC233126	0.0	Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-162g22 map 1, complete sequence
GenBank	AC246946	0.0	Solanum lycopersicum chromosome 3 clone HBa0188D04, complete sequence
GenBank	AC247010	0.0	Solanum lycopersicum chromosome 3 clone HBa0188D04, complete sequence

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019261901.1	1e-113	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	K4BG86	0.0	K4BG86_SOLLC; Uncharacterized protein
STRING	Solyc03g044690.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1726	9	31
Representative plant	OGRP30	12	351

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	5e-51	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Solyc03g044690.1.1

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]