PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc03g044460.1.1
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 147aa    MW: 16758.5 Da    PI: 10.2484
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc03g044460.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.45.9e-0970111854
                         HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         + r RR++i +++  L++l+P       +K++ a++L +Av+Y+k L
  Solyc03g044460.1.1  70 AARHRREKISEKIRILQRLVPGG-----TKMDTASMLDEAVHYVKFL 111
                         5699*****************87.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.35162111IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.1E-1563130IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.21E-1064116No hitNo description
SuperFamilySSF474591.13E-1465123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.8E-1368117IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.8E-671111IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 147 aa     Download sequence    Send to blast
MDLNEITQSI NNIEMIQLLP IHNSSSIDHV IMREMIFGIA MMQPIKIDPE SVKPPKRKNV  60
KISKDPRSVA ARHRREKISE KIRILQRLVP GGTKMDTASM LDEAVHYVKF LKKQLKSLEQ  120
ATTACSNDRN NNRFVSGFNQ CPHNCY*
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in the developing septum, transmitting tract and stigma. {ECO:0000269|PubMed:17855426}.
UniprotTISSUE SPECIFICITY: Gynoecium. {ECO:0000269|PubMed:17855426}.
Functional Description ? help Back to Top
Source Description
UniProtRequired for the female reproductive tract development and fertility. {ECO:0000269|PubMed:17855426}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc03g044460.1.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by ARF3/ETT in the abaxial gynoecium. {ECO:0000269|PubMed:17855426}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2330610.0Solanum lycopersicum chromosome 9 clone C09HBa0037P10, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015170922.12e-67PREDICTED: transcription factor HEC2-like
SwissprotQ9SND44e-42HEC2_ARATH; Transcription factor HEC2
TrEMBLA0A3Q7FJI61e-104A0A3Q7FJI6_SOLLC; Uncharacterized protein
STRINGSolyc03g044460.1.11e-105(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA75223101
Representative plantOGRP7611568
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50330.12e-44bHLH family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  2. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  3. Zhu L, et al.
    A Negative Feedback Loop between PHYTOCHROME INTERACTING FACTORs and HECATE Proteins Fine-Tunes Photomorphogenesis in Arabidopsis.
    Plant Cell, 2016. 28(4): p. 855-74
    [PMID:27073231]