PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc03g043810.1.1
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bZIP
Protein Properties Length: 125aa    MW: 14389.7 Da    PI: 10.8639
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc03g043810.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_127.28.7e-095186439
                        XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1  4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLe 39
                         k+ rr ++NR++A+r R RK ++++ L++++k+Le
  Solyc03g043810.1.1 51 MKKLRRTISNRLSAQRARMRKIEYTDGLKKEAKNLE 86
                        6999*****************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579591.42E-85194No hitNo description
PfamPF001701.5E-75186IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1704.2E-95286No hitNo description
PROSITE patternPS0003605570IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 125 aa     Download sequence    Send to blast
MNEKRNKSAE PNLSLSLKTP IEYESINNIP TLEEAVNLEL KNGQVDPNVN MKKLRRTISN  60
RLSAQRARMR KIEYTDGLKK EAKNLEIIFG EWRRIVSFGK GTVKDPPKPR QFHTKVFIVK  120
REAI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc03g043810.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0095451e-42Solanum lycopersicum DNA, chromosome 8, clone: C08HBa0034F03, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015069614.28e-52basic leucine zipper 34-like
TrEMBLK4BG012e-84K4BG01_SOLLC; Uncharacterized protein
STRINGSolyc03g043810.1.14e-85(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA76151929
Representative plantOGRP1346725
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07160.13e-07bZIP family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]