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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc03g034260.1.1 | ||||||||
Common Name | LOC101252664 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 185aa MW: 21441 Da PI: 6.2922 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 31.6 | 2.2e-10 | 16 | 60 | 2 | 46 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkl 46 +ien++ vtf +Rr + A+EL Cd+++ +++fs++++ Solyc03g034260.1.1 16 KIENQRVSDVTFFNRRSSLYRMANELVDFCDVDIGIVLFSPSNHP 60 79***************************************9985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 15.446 | 7 | 67 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.6E-5 | 7 | 66 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 4.06E-15 | 9 | 81 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.6E-6 | 9 | 29 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.1E-14 | 16 | 63 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.6E-6 | 29 | 44 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.6E-6 | 44 | 65 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 185 aa Download sequence Send to blast |
MDSKKTRVRQ TFPISKIENQ RVSDVTFFNR RSSLYRMANE LVDFCDVDIG IVLFSPSNHP 60 FSFFHPTSEA VIERFLNPDS QLSEKTRLDA EQARNKVNQL NNRLDAMEKR IEQIEEIEHA 120 QTLLQLSQTE ENGERSKWKS IDQLNANEIP TFEAWLRTTV SKMNYRLEKL ENEASSLKNA 180 RGTS* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc03g034260.1.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004234621.1 | 1e-134 | agamous-like MADS-box protein AGL29 | ||||
TrEMBL | A0A3Q7FG09 | 1e-133 | A0A3Q7FG09_SOLLC; Uncharacterized protein | ||||
STRING | Solyc03g034260.1.1 | 1e-133 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA382 | 20 | 138 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34440.1 | 7e-09 | AGAMOUS-like 29 |
Link Out ? help Back to Top | |
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Phytozome | Solyc03g034260.1.1 |
Entrez Gene | 101252664 |
Publications ? help Back to Top | |||
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