PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

HD-ZIP

Protein Properties

Length: 225aa MW: 26776.2 Da PI: 6.0056

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc03g034130.2.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	62.4	6.9e-20	61	116	2	57
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 rkR +++eq++ Le+ F ++++ +e++++LA+++gL+ qV vWFqNrRa++k+ Solyc03g034130.2.1 61 RKRKLLSEEQVNLLERSFGDQHKLETERKAKLASEVGLDPHQVAVWFQNRRARWKN 116 89****************************************************95 PP
2	HD-ZIP_I/II	107.5	1e-34	62	152	2	92
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 k++ ls+eqv+lLE+sF ++kLe+erK++la+e+gl+p+qvavWFqnrRAR+k+++lE++y++Lk++++ e++rLe+ev +++e+l Solyc03g034130.2.1 62 KRKLLSEEQVNLLERSFGDQHKLETERKAKLASEVGLDPHQVAVWFQNRRARWKNRKLEEEYSKLKTQHEDTIIEKCRLETEVLKMKEQLC 152 66778**********************************************************************************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.5E-17	53	122	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.167	57	117	IPR001356	Homeobox domain
SMART	SM00389	2.3E-18	59	121	IPR001356	Homeobox domain
Pfam	PF00046	5.5E-17	61	116	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	5.8E-20	61	124	IPR009057	Homeodomain-like
CDD	cd00086	6.15E-15	61	118	No hit	No description
PRINTS	PR00031	2.2E-5	88	97	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	92	115	IPR017970	Homeobox, conserved site
PRINTS	PR00031	2.2E-5	97	113	IPR000047	Helix-turn-helix motif

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 225 aa Download sequence Send to blast
MEKGLSMKGN KVDDQMELIS HFYPQIYSQL AQQQEETVKP RRRRRKNKDE GRDNTSEVLM 60 RKRKLLSEEQ VNLLERSFGD QHKLETERKA KLASEVGLDP HQVAVWFQNR RARWKNRKLE 120 EEYSKLKTQH EDTIIEKCRL ETEVLKMKEQ LCEAKKEIER LLLEHKSDIS SNNSPTSSIF 180 SMEQSHFNLG EFGMEEQLMD DNMFFVADYQ SNYVTLWDNE LEWI*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	43	63	RRKNKDEGRDNTSEVLMRKRK

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Widely expressed. {ECO:0000269\|PubMed:16055682}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc03g034130.2.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269\|PubMed:16055682}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004234616.1	1e-166	homeobox-leucine zipper protein ATHB-40-like
Swissprot	Q9ZU70	3e-58	ATB21_ARATH; Homeobox-leucine zipper protein ATHB-21
TrEMBL	M1BIA9	1e-133	M1BIA9_SOLTU; Uncharacterized protein
STRING	Solyc03g034130.2.1	1e-165	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1289	24	80
Representative plant	OGRP3776	10	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36740.1	9e-55	homeobox protein 40

Link Out ? help Back to Top
Phytozome	Solyc03g034130.2.1
Entrez Gene	101251158

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] González-Grandío E, et al. Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254 [PMID:28028241]